Dynamic association rules for gene expression data analysis

BMC Genomics

Table 10 Expressed imprinted genes in the RNA-seq data of Yamaguchi et al. [22]

Gene symbol	Expressing allele	at least two out of ten FC > 1.5
Gene symbol	Expressing allele	Significant (up, down) or not	Intersect with significant association rules	Multiple t-test (adj. p-value)
Mest	P	Down		1
H19	M	Up		1
Meg3	M	Down		1
Grb10	M	Up	1 geneA - > paternal^KO	1
Rian	M	Down		1
Peg10	P	Down	−1 geneA - > paternal^KO	1
Cdkn1c	M	Up		1
Peg3	P	up/down		1
Sgce	P	Down	−1 geneA - > paternal^KO	1
Asb4	M	Up	1 geneA - > paternal^KO	1
Cmah	M	Down		1
Impact	P	Down		1
Pon2	M	Down		1
Ube3a	M	Up		1
Peg13	P	Down		1
Phlda2	M	Down		1
Dcn	M	Up		1
Airn	P	up/down		1
Ddc	P	Down		1
Zim1	M	Up		1
Magel2	P	Down		1
Begain	P	up/down		1
Tspan32	M	Down	−1 geneA - > paternal^KO	1
Art5	M	Down		1
Wt1	M	Up		0.818182
Qpct	M	Down		1
Atp10a	M	Down		1
Nespas	P	Down	−1 geneA - > paternal^KO	1
Tnfrsf23	M	Down		1
Tfpi2	M	Down		1
Sfmbt2	P	up/down		1
Nap1l5	P	Up	1 geneA - > paternal^KO	1
Slc22a18	M	Down		1
Th	M	Up	1 geneA - > paternal^KO	1
Usp29	P	Down		1
Cntn3	M	Down		1
Mst1r	M	Down		1
Calcr	M	Down		1
Kcnq1	M	Down		1

ISSN: 1471-2164