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Table 1 Functional classes of genes

From: Integrated ordination of miRNA and mRNA expression profiles

CYP family
 CYP8B1 (-19), CYP4F3 (-28), CYP4F2 (-18), CYP4A11 (-7), CYP3A7 (-6), CYP3A5 (-5), CYP3A4 (-7), CYP39A1 (-7), CYP2J2 (-6), CYP2E1 (-14), CYP2D6 (-8), CYP2C9 (-8), CYP2C8 (-12), CYP2C19 (-7), CYP2C18 (-7), CYP2B6 (-10), CYP26A1 (-5), CYP1A2 (-14), CYP1A1 (-7)
Transcription factors
 NR1I3 (-7), NR1I2 (-6), HNF4A (-5), FOXA3 (-7)
HLA class II
 HLA-DRA (7), HLA-DQB1 (7), HLA-DQA1 (14), HLA-DPB1 (9), HLA-DPA1 (6), HLA-DOA (8), HLA-DMB (6), HLA-DMA (10), CD74 (6)
B cells
 TNFRSF17 (14), SEL1L3 (6), POU2AF1 (32), MZB1 (18), IGLL3P (10), IGLJ3 (6), IGKV4-1 (7), IGKV1-5 (12), IGKC (13), IGHM (12), IGHD (5), FCRL5 (11)
Monocytes/macrophages
 CD86 (5), CD163 (5), C1QC (6), C1QB (13), C1QA (10)
Cell proliferation
 ZWINT (5), TOP2A (7), RRM2 (7), PRR11 (7), PRC1 (5), NDC80 (5), DLGAP5 (6), CDC20 (6), CCNB1 (5), BUB1B (5), ANLN (5), AKR1B10 (18)
T cells
 VTCN1 (6), VSIG4 (10), TRAC (5), LAX1 (5), CD8A (7), CD3D (5), CD2 (8)
T-NK cells
 SLAMF7 (9), RASGRP1 (7), PRDM1 (6), NKG7 (6), KLRK1 (6), GZMK (5), GZMH (7), GZMB (13), GZMA (12), GNLY (6)
Complementa
 C9 (-118), C8G (-6), C8B (-36), C8A (-39), C6 (-10), C5 (-15), C4BPB (-20), C4BPA (-18), C3P1 (-19), C1S (-6)
  1. In parentheses are the fold changes of original data, not corrected for necrosis
  2. aComplement components C1QC, C1QB and C1QA were attributed to monocytes/macrophages as these proteins are mostly produced by these cells