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Table 2 Summary of runs of homozygosity (ROHs) detected in whole genome sequencing data of ten horses

From: Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses

  Horse 1 Horse 2 Horse 3 Horse 4 Horse 5 Horse 6 Horse 7 Horse 8 Horse 9 Horse 10
  Dülmen Sorraia Sorraia Hanoverian Hanoverian Hanoverian Hanoverian Saxon-Thuringian Heavy Warmblood Arabian Thoroughbred (SRR1055837)
Number of ROHs (50) 2804 4395 3955 2965 3214 3104 3167 3138 3581 4595
Number of private ROHs (50) 722 1578 1349 538 752 662 709 739 934 1940
Number of ROHs (500) 188 541 422 145 202 179 175 211 259 599
Number of private ROHs (500) 152 352 285 80 150 84 109 123 153 459
  1. The number of ROHs in windows of a minimum amount of 50 homozygous SNPs and 500 homozygous SNPs are shown. All ROHs were compared in-between horses and filtered for private ROH regions that could only be found in one horse
  2. 50 = A minimum amount of 50 homozygous SNPs
  3. 500 = A minimum amount of 500 homozygous SNPs