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Table 3 Functional annotations in private runs of homozygosity (ROH) of 50-SNP windows

From: Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses

PANTHER gene ontology terms Horse 1 Horse 2 Horse 3 Horse 4 Horse 5 Horse 6 Horse 7 Horse 8 Horse Horse 10
Dülmen Sorraia (%) Sorraia (%) Hanoverian (%) Hanoverian (%) Hanoverian (%) Hanoverian (%) Saxon-Thuringian Heavy Warmblood (%) Arabian (%) Thoroughbred (SRR1055837) (%)
Horse (%)
Cellular component organization or biogenesis (GO:0071840) 3.6 3.1 2.8 3.2 4.0 4.5 5.3 4.4 3.5 4.0
Cellular process (GO:0009987) 18.7 19.9 18.2 18.8 21.5 20.2 20.3 20.8 19.3 18.6
Localization (GO:0051179) 8.3 9.3 10.2 10.3 7.5 11.3 9.9 11.2 10.6 8.6
Apoptotic process (GO:0006915) 2.2 1.5 2.8 2.1 1.7 1.9 1.8 1.4 2.7 2.6
Reproduction (GO:0000003) 1.9 1.8 3.7 2.1 1.3 2.0 0.7 1.2 0.4 1.8
Biological regulation (GO:0065007) 10.2 9.3 9.2 9.8 8.1 9.7 11.3 9.1 9.7 9.6
Response to stimulus (GO:0050896) 5.2 5.6 6.3 5 4.5 4.6 3.7 4.7 5.2 6.3
Developmental process (GO:0032502) 8.9 6.8 8.2 10.1 11.1 9.7 8.5 6.8 8.9 8.6
Multicellular organismal process (GO:0032501) 5.6 6.1 5.4 7.4 5.5 6.0 6.2 5.9 5.6 5.4
Locomotion (GO:0040011) 0.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.4 0.0
Biological adhesion (GO:0022610) 2.8 4.2 2.4 3.7 6.8 2.8 3.2 3.5 2.7 3.1
Metabolic process (GO:0008152) 27 26.8 24.2 21.8 23.4 22.7 24.7 25.3 26.3 23.4
Growth (GO:0040007) 0.1 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Immune system process (GO:0002376) 5.4 5.5 6.6 5.6 4.5 4.5 4.2 5.6 4.8 8.2
  1. PANTHER gene list analysis (http://www.pantherdb.org/) was performed for genes in private ROH regions which could be exclusively found in one specific horse. The percent of gene hits against total number of process hits involved in specific biological processes are shown