Prospecting major genes in dairy buffaloes

de Camargo, GMF; Aspilcueta-Borquis, RR; Fortes, MRS; Porto-Neto, R.; Cardoso, DF; Santos, DJA; Lehnert, SA; Reverter, A.; Moore, SS; Tonhati, H.

doi:10.1186/s12864-015-1986-2

BMC Genomics

Table 6 Genes near to the most significant SNPs (p < 0.0001) for ten production traits.

From: Prospecting major genes in dairy buffaloes

Trait^a	SNP name	Chr	Position (bp)	%Vp	Within Gene	100 kb	<500 kb
MP	AX-85176853	1	80123930	0.46		LOC100847171
						BCL6
						RTP2
						SST
	AX-85092281	16	69184336	0.38		PTGS2
	AX-85092281	16	69184336	0.38		LOC100295047
	AX-85110813	1	50360638	0.30	ALCAM
	AX-85154407	14	73498202	0.27		LOC101908004
	AX-85048498	3	14771362	0.22	UBQLN4
%F	AX-85075989	6	64757051	0.14		KCTD8
	AX-85070208	6	81132415	0.10		LOC782855
	AX-85070208	6	81132415	0.10		LOC101904777
	AX-85172444	X	52208657	0.09	LOC100294934
	AX-85172444	X	52208657	0.09	LOC100294888
	AX-85099016	16	21197965	0.07			ESRRG
							TRNAY-AUA
							GPATCH2
	AX-85061238	10	93617773	0.06	GTF2A1
	AX-85056378	23	15403744	0.06	LOC101902323
	AX-85056378	23	15403744	0.06	FOXP4
%P	AX-85104983	17	66753221	1.08		LOC101903483
						SART3
						ISCU
						CMKLR1
						WSCD2
	AX-85050041	17	26092651	1.02	-	-	-
	AX-85081756	5	76365673	1.01		MFNG
						CARD10
						USP18
FP	AX-85083515	16	57250501	0.77		GPR52
FP	AX-85083515	16	57250501	0.77		LOC101908155
	AX-85044438	5	76008737	0.69		TMPRSS6
						LOC510185
						C1QTNF6
						SSTR3
						LOC101906944
						RAC2
						MIR1835
						CYTH4
	AX-85139912	23	50686128	0.61		SERPINB6
						SERPINB9
						SERPINB1
						WRNIP1
						LOC101904132
						MYLK4
	AX-85061966	9	15900553	0.59	IMPG1
	AX-85105219	27	39157445	0.47	LRRC3B
PP	AX-85174902	22	60177121	0.72	LOC101905145
	AX-85051961	23	15787091	0.57	CCND3
	AX-85110855	10	98773695	0.55			FLRT2
							TRNAC-ACA
							LOC101906220
							LOC785091
SCS	AX-85164456	16	71885776	0.004			PROX1
							LOC100139281
							TRNAG-CCC
							RPS6KC1
	AX-85093628	26	18748400	0.003		HOGA1
						MORN4
						PI4K2A
						AVPI1
						MARVELD1
						ZFYVE27
						SFRP5
						GOLGA7B
	AX-85136262	5	116846374	0.003	ATXN10
	AX-85092482	7	103828217	0.002	SLCO6A1
	AX-85149935	14	74769387	0.002		RUNX1T1
AFC	AX-85049453	X	95335754	0.54	LOC100299005
	AX-85061054	8	22838009	0.40		LOC538589
						IFNAD
						IFNW1
						LOC618947
						IFN-TAU
						LOC781948
						LOC100335490
						LOC101904956
						LOC100847941
						KLHL9
						IFNAG
CI	AX-85069024	17	63515708	0.22	TPCN1
	AX-85175568	10	30077602	0.21	SCG5
	AX-85067656	26	49118646	0.20		LOC101903522
	AX-85067656	26	49118646	0.20		MGMT
NSC	AX-85051327	12	71075601	0.04	LOC100336232
	AX-85169432	1	69359581	0.02	LOC100847188
	AX-85117598	23	48414155	0.02	LY86
OD	AX-85113259	9	40931034	0.04	FIG 4

^aTraits: MP Milk production, %F fat percentage, %P protein percentage, FP fat production, PP protein production, SCS somatic cell score, AFC age at first calving, NSC number of services per conception, OD open days

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ISSN: 1471-2164

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