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Table 6 Genes near to the most significant SNPs (p < 0.0001) for ten production traits.

From: Prospecting major genes in dairy buffaloes

Traita SNP name Chr Position
(bp)
%Vp Within Gene 100 kb <500 kb
MP AX-85176853 1 80123930 0.46   LOC100847171  
BCL6
RTP2
SST
  AX-85092281 16 69184336 0.38   PTGS2  
LOC100295047
  AX-85110813 1 50360638 0.30 ALCAM   
  AX-85154407 14 73498202 0.27   LOC101908004  
  AX-85048498 3 14771362 0.22 UBQLN4   
%F AX-85075989 6 64757051 0.14   KCTD8  
  AX-85070208 6 81132415 0.10   LOC782855  
LOC101904777
  AX-85172444 X 52208657 0.09 LOC100294934   
LOC100294888
  AX-85099016 16 21197965 0.07    ESRRG
TRNAY-AUA
GPATCH2
  AX-85061238 10 93617773 0.06 GTF2A1   
  AX-85056378 23 15403744 0.06 LOC101902323   
FOXP4
%P AX-85104983 17 66753221 1.08   LOC101903483  
SART3
ISCU
CMKLR1
WSCD2
  AX-85050041 17 26092651 1.02 - - -
  AX-85081756 5 76365673 1.01   MFNG  
CARD10
USP18
FP AX-85083515 16 57250501 0.77   GPR52  
LOC101908155
  AX-85044438 5 76008737 0.69   TMPRSS6  
LOC510185
C1QTNF6
SSTR3
LOC101906944
RAC2
MIR1835
CYTH4
  AX-85139912 23 50686128 0.61   SERPINB6  
SERPINB9
SERPINB1
WRNIP1
LOC101904132
MYLK4
  AX-85061966 9 15900553 0.59 IMPG1   
  AX-85105219 27 39157445 0.47 LRRC3B   
PP AX-85174902 22 60177121 0.72 LOC101905145   
  AX-85051961 23 15787091 0.57 CCND3   
  AX-85110855 10 98773695 0.55    FLRT2
TRNAC-ACA
LOC101906220
LOC785091
SCS AX-85164456 16 71885776 0.004    PROX1
LOC100139281
TRNAG-CCC
RPS6KC1
  AX-85093628 26 18748400 0.003   HOGA1  
MORN4
PI4K2A
AVPI1
MARVELD1
ZFYVE27
SFRP5
GOLGA7B
  AX-85136262 5 116846374 0.003 ATXN10   
  AX-85092482 7 103828217 0.002 SLCO6A1   
  AX-85149935 14 74769387 0.002   RUNX1T1  
AFC AX-85049453 X 95335754 0.54 LOC100299005   
  AX-85061054 8 22838009 0.40   LOC538589  
IFNAD
IFNW1
LOC618947
IFN-TAU
LOC781948
LOC100335490
LOC101904956
LOC100847941
KLHL9
IFNAG
CI AX-85069024 17 63515708 0.22 TPCN1   
  AX-85175568 10 30077602 0.21 SCG5   
  AX-85067656 26 49118646 0.20   LOC101903522  
MGMT
NSC AX-85051327 12 71075601 0.04 LOC100336232   
  AX-85169432 1 69359581 0.02 LOC100847188   
  AX-85117598 23 48414155 0.02 LY86   
OD AX-85113259 9 40931034 0.04 FIG 4   
  1. aTraits: MP Milk production, %F fat percentage, %P protein percentage, FP fat production, PP protein production, SCS somatic cell score, AFC age at first calving, NSC number of services per conception, OD open days