Skip to main content

Table 6 MHC class 1-like genes predicted from genomic BAC sequences published by Gao et al. (2010)

From: A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region

Name # S Location #Ex AA len SP ♋1/♋2 ♋3 TM C-Term Type Homologue
FJ985864rc_C1a 1 + 53040–56369 8 364 1-25 26–203 207–299 310–331 336–363 Ia NP_001124406
FJ985864rc_C1b 2 + 97997–113333 5a 229 No 27–93 95–186 194 215 No   NP_001124406
FJ985864rc_C1c 3 + 130285–133430 7 346 1–22 23–200 205–296 304–325 329–346b Ib NP_001124406
FJ985870_C1a 1 + 26626–30134 8 364 1–25 26–203 207–299 310–331 336–363 Ia NP_001124406
FJ985870_C1b 2 + 71762–87098 5a 229 No 27-93 95-186 194 215 No   NP_001124406
FJ985870_C1c 3 + 104051–107196 7 346 1–22 23–200 205–296 304–325 329–346b Ib NP_001124406
FJ985875rc_C1a 4 - 127171–130033 7 354 1–25 26–203 207–299 307 –329 332–354 Ib NP_001035644
FJ985875rc_C1b 5 - 160117–162943 6 337 1–25 26–187 189–233 242–262 267–279b Ib NP_001035644
FJ985859rc_C1a 6 - 1806–4642 7 356 1–25 26–203 207–299 308 327 332–356b Ib CAI43976
FJ985859rc_C1b 7 - 28878–34806 7 355 1-18 28-204 208-300 309 329 333–355 Ib NP_001124406
FJ985859rc_C1c 8 - 148998-151240 5 356 1–25 52–229 233–325 333 350 No   AAZ74696
FJ985874C1a 8 - 6993-9231 5 355 1–24 51–228 232–324 332 349 No   AAZ74696
FJ985874C1bc 9 - 34484-37396 8 360 1–22 23–200 204–296 305 328 331–359 Ib FJ985864rc_C1a
FJ985874C1b2c 9 - 34390-37396 7 383 1–22 23–200 204–296 305 328 331–359 Ib CAI43976
FJ985874C1c 10 - 77708-81297 7 379 1–25 26–203 207-299 305 328 333–355b Ib NP_998933
FJ985874C1d 11 - 96704-100257 7 374 1–24 50–228 232–324 333–353 358–374b Ib NP_001070451
  1. S: strand. #: Locus number in telomeric to centromeric direction. #Ex: number of exons identified. AA len: Length of predicted amino acid sequence. SP: signal peptide. α1: alpha 1 domain. α2: alpha 2 domain. α3: alpha 3 domain. TM: transmembrane domain. C-Term: C-terminus end. Homologue indicates sequence used as homologous protein sequence with FGENESH+
  2. aTerminal exon not predicted. bWeak match. cAlternative transcript predictions