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Table 1 Loci for the PabI family of RM systems in Helicobacter and Campylobacter

From: Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance

Locus

Upstream gene

Downstream gene

H-1

Hypothetical protein containing ankyrin repeats

Multidrug transporter MatE/RelE-family toxin

H-2

Adenylosuccinate lyase

Hypothetical protein

H-3

GMP synthase

Poly A polymerase/Methionyl-tRNA formyltransferase

H-4

Shikimate 5-dehydrogenase

DNA polymerase III subunit delta/Hypothetical protein

H-5

Glutamate synthase large chain

Glutamate synthase small chain

H-6

ABC transporter permease

TetR family transcriptional regulator

H-7

ABC transporter ATP-binding protein

MFS transporter

H-8

Argininosuccinate synthase

Long-chain fatty acid transport protein

H-9

DNA gyrase B

Outer membrane protein 8/Outer membrane protein

C-1

GMP synthase

(No sequence information)

C-2

Imidazole glycerol-phosphate dehydratase

Imidazole glycerol phosphate synthase

C-3

Carbamoyl phosphate synthase large subunit

COG0009 Putative translation factor (SUA5)

C-4

Adenylosuccinate lyase

Ribonucleotide reductase of class Ia (aerobic), alpha subunit

C-5

RelE family toxin

Hypothetical protein with DUF4279

  1. The closest genes that are not components of RM system are shown. In cases of more than two gene arrangements in the same group, two genes are shown, divided by a slash (/). H-1 to H-9 are in Helicobacter, C-1 to C-5 in Campylobacter. Orthologous genes seen in different locus groups are italicized (H-2, H-3, C-1 and C-4)