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Table 2 Overview of reads and sequence assembly of both compatible and incompatible transcriptomic data

From: Large-scale identification of wheat genes resistant to cereal cyst nematode Heterodera avenae using comparative transcriptomic analysis

Sample

Read

Unique transcript

Total Length (nt)

Mean Length (nt)

N50 (nt)

Transcript (>200 nt)

I-24h_0

110,696,256

137,632

96,530,157

701

1,257

112,045

I-24h_CN

109,831,800

I-3d_0

105,034,822

I-3d_CN

106,544,764

I-8d_0

110,924,676

I-8d_CN

108,397,110

C-24h_0

107,577,970

142,116

97,125,168

683

1,214

115,305

C-24h_CN

106,514,220

C-3d_0

109,875,622

C-3d_CN

106,119,562

C-8d_0

109,112,640

C-8d_CN

106,343,260

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BMC Genomics

ISSN: 1471-2164

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