Skip to main content

Table 1 Sequencing, assembly, and in silico hybridization statistics

From: In silico hybridization enables transcriptomic illumination of the nature and evolution of Myxozoa

Assembly  
Raw reads 409,520,180
Reads after quality control 195,155,200
Assembled contigs 930,419
Contigs after redundancy filtration 575,740
Length min-max 200–16,127
Average length 802
N50 1288
G-C content 33.30 %
Raw reads mapped to contigs 193,101,058 (47.2 %)
In silico pipeline  
Only matched to Myxozoa 232,396
Stronger match to Myxozoa 39,651
Total identified as myxozoan 272,047 (47.3 %)
Only matched to host 15,057
Stronger match to host 85,043
Match to other contamination 335
Total identified as host/contamination 100,435 (17.4 %)
Too close to calla 14,084
No significant match found 189,174
Total without annotation 203,258 (35.3 %)
  1. For in silico pipeline statistics, percentages in parentheses reflect proportion of contigs assigned to that category out of the redundancy-filtered set of contigs
  2. aMatched both myxozoan and host query sets with e-values within two orders of magnitude of one another