Skip to main content

Table 1 Gene Ontology analysis of genes down-regulated in response to DHA in P. falciparum K1 rings from RNA-seq analysis

From: Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray study

Term

Count

List Total

Pop Hits

Pop Total

PValue

FDR

GO:0006412 ~ translation

70

151

168

1076

1.5E–22

2.0E–19

GO:0044445 ~ cytosolic part

38

115

61

869

3.8E–20

4.3E–17

GO:0005840 ~ ribosome

48

115

108

869

8.3E–18

9.2E–15

GO:0005829 ~ cytosol

42

115

84

869

1.3E–17

1.4E–14

GO:0003735 ~ structural constituent of ribosome

44

184

96

1289

2.4E–14

3.0E–11

GO:0030529 ~ ribonucleoprotein complex

52

115

150

869

7.4E–14

8.2E–11

GO:0005198 ~ structural molecule activity

44

184

115

1289

4.8E–11

6.1E–08

GO:0043228 ~ non-membrane-bounded organelle

49

115

167

869

8.7E–10

9.6E–07

GO:0022627 ~ cytosolic small ribosomal subunit

16

115

22

869

1.9E–09

2.1E–06

GO:0015935 ~ small ribosomal subunit

19

115

35

869

2.5E–08

2.8E–05

GO:0008135 ~ translation factor activity, nucleic acid binding

17

184

47

1289

3.8E–04

4.8E–01

GO:0006006 ~ glucose metabolic process

10

151

20

1076

6.7E–04

9.1E–01

GO:0016052 ~ carbohydrate catabolic process

10

151

21

1076

1.0E–03

1.4E + 00

GO:0044275 ~ cellular carbohydrate catabolic process

10

151

21

1076

1.0E–03

1.4E + 00

GO:0046164 ~ alcohol catabolic process

10

151

21

1076

1.0E–03

1.4E + 00

GO:0005853 ~ eukaryotic translation elongation factor 1 complex

5

115

5

869

1.3E–03

1.4E + 00

GO:0019318 ~ hexose metabolic process

10

151

22

1076

1.6E–03

2.1E + 00

  1. Enrichment of GO terms in 367 significantly down-regulated genes (gene list) was calculated relative to the total of 4075 genes detected as expressed in this stage (background list). The GO terms listed are those considered significant from DAVID analysis (FDR < 5 %) and non-redundant by REVIGO filtering