Fig. 6

Imputation accuracy with 95 % CI of masked SNPs in different generations obtained with different imputation software package. The imputation accuracy is the correlation between the sequenced and imputed genotypes which were masked as dummy genotypes on 3 chromosomes (3, 6 and 28) with 5 replications. Imputation accuracy measured as the correlation between original imputed and original true genotype per individual is shown in (a), while imputation accuracy measured as the correlation between standardized imputed and standardized true genotype per individual is shown in (b)