Table 1 Characteristics of mariner lineages identified in the Rhodnius prolixus genome. Column “Clean Independent Copy Number” reports the number of copies not truncated by “N” and corresponding to true transposition events (different flanking sequences). Column “Potentially Active Copies” indicates if at least one complete ORF (>1000 bp) has been found among copies
From: Mariner transposons are sailing in the genome of the blood-sucking bug Rhodnius prolixus
Clusters | Total Copy Number | Clean Independent Copy Number | Subfamily | Lenght | TIR lenght | TIR sequences | Potentially Active Copies | Remarks |
|---|---|---|---|---|---|---|---|---|
Rpmar10 | 125 | 93 | vertumnana | 1305 | 35 | CGAGGGGCACTACTTATATTTTGAGCCTTGGCAAC | Yes | Putative Horizontal Transfer |
Rpmar16 | 6 | 5 | New | 1320 | 28 | CGAGGGTCATTCGTAAAGTAAGGTTCCC | Yes | |
Rpmar9 | 91 | 52 | New | 1050 | 33 | CGAGGGTCATTCAATAAGTAACGAGACAAATTA | No | |
Rpmar13 | 6 | 3 | New | 1312 | 30 | CGAGGGTGAATCAAATATAAACGAGACTT | No | |
Rpmar33 | 8 | 7 | New | 1375 | 27 | CGAGGCATGTCCAGAAAGTAAGTGTA | No | |
Rpmar48 | 48 | 46 | New | 876 | 29 | CGAGGGTTGGCTGAAAAGTAATGCACACA | Deleted | |
Rpmar0 | 8041 | 3259 | irritans | 1291 | 28 | CGAGGGTCGTTTGAAAAGTCCGTGCAAA | Yes | Putative Horizontal Transfer |
Rpmar35 | 195 | 26 | irritans | 898-917 | 28 | CGAGGGTCGTTTGAAAAGTCCGTGCAAA | Deleted (Rpmar0) | |
Rpmar22 | 37 | 30 | irritans | 1270 | 28 | CGAGGGTGGTTTGAAAAGTTCTCGGAAT | Yes | |
Rpmar5 | 32 | 24 | irritans | 1285 | 33 | ACACATGGGCTGAAAAGTCCCGGGCCTAACACA | No | Putative Horizontal Transfer |
Rpmar1 | 767 | 401 | drosophila | 1315 | 29 | CGAGGTGTGTTCAAAAAGTAACGGGAATT | Yes | |
Rpmar6 | 488 | 246 | drosophila | 1329 | 29 | CGAGGGGGTACCCAAAAATAACCGGAATT | Yes | |
Rpmar26 | 9 | 8 | drosophila | 1320 | 29 | CAGGGTGTGTATTTTAAGTAATGAGAATA | No | |
Rpmar17 | 205 | 140 | drosophila | 922 | 57 | CGAGGTCTGTAAATTAAGTAATGAGACTGATTTTTTTAATTTTTTTTATTCAAAAAG | Deleted/Recombined | |
Rpmar63 | 154 | 135 | drosophila | 897 | 27 | CGAGATTTGGTTATTAAATAACGAGAC | Deleted | Putative Horizontal Transfer |
Rpmar11 | 73 | 56 | drosophila | 921 | 33 | CGAGGTATGTTCAAAAAATAAGGTGAATTTTCA | Deleted | |
Rpmar83 | 20 | 17 | drosophila | 826 | 32 | CGAGGTATGGCTATTAAATAACGAGACTGATG | Deleted | |
Rpmar57 | 17 | 14 | drosophila | 918 | 32 | CGAGGTCTGTTCAAAAAGTATCACGAATTTTG | Deleted | Putative Horizontal Transfer |
Rpmar65 | 5 | 5 | drosophila | 898 | 28 | CAGGGTGCGTTCCAAAAGTAATGCAATT | Deleted | |
Rpmar4 | 165 | 132 | mellifera | 1333 | 31 | WYGGGTTGGCCAATAAGTTCGTTCGGTTTTT | No | |
Rpmar12 | 40 | 29 | mellifera | 1296 | 31 | WTGGGTTGGCAACTAAGTCATTGCGGATTTT | No | Putative Horizontal Transfer |
Rpmar23 | 25 | 20 | mellifera | 1291 | 30 | TTGGGTTGGCAACTAAGTAATTTCGGTTTT | No | |
Rpmar27 | 22 | 19 | mellifera | 1251 | 33 | TAATGGGTTGGGGAAAAATAAATCCATTATTTT | No | Putative Horizontal Transfer |
Rpmar20 | 6 | 6 | mellifera | 1285 | 30 | TCGGGTTGGCAAATAAGTCCTTTCGATTTT | No | |
Rpmar15 | 18 | 15 | mauritiana | 1281 | 29 | CaaAGGTGCATAAGTTTTTTCCGGTTTAA | Yes | |
Rpmar19 | 16 | 8 | mauritiana | 1291 | 30 | TCGGGTGTGTGCATTAATTTTAAGGATTTT | Yes | |
Rpmar21 | 7 | 7 | mauritiana | 1299 | 30 | CATAGGTGTAGAAGTATGAAACCGGAATTT | No | |
Rpmar14 | 148 | 125 | cecropia | 1293 | 22 | TTGGGTTATCCAGAATATAATG | No | |
Rpmar24 | 28 | 16 | cecropia | 1295 | 31 | TTGGGTTGGTGCAAAAATAATGCAGGTTTTT | Yes | |
Rpmar31 | 14 | 29 | cecropia | 908 | 31 | TYGGGTTGTCAAGTATGAATGGAGCAAAGTT | Deleted | |
Rpmar49 | 13 | 13 | capitata (?) | 970 | 221 | WTAGGGGGACCGAAAAGTAATCAAAA… | Deleted/Recombined | |
Rpmar30 | 7 | 6 | capitata (?) | 1258 | 25 | ATRGGGGCACCGGAAAGTAATGTTT | No | Putative Horizontal Transfer |