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Table 2 Cross-validation with previous CNV discovery studies in the same populationa

From: Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek’s disease

Studies Platform Reference Samples CNVR countb CNVR size (kb) Overlap with this study
Total Mean Max Min CNVR # Pct.c Overlap size (kb) Pct.d
This study Next generation sequencing Galgal4 6 5,680 29,410 5 544 0.1     
Crooijmans et al. [30] Agilent 244 K aCGH chip Galgal3 10 346 18,908 55 5,321 3 126 36.4 6,981 36.9
Luo et al. [31] NimbleGen 385 k aCGH chip Galgal3 4 32 1,399 44 190 10 19 59.4 694 49.6
Cumulatede - - -   19,379 53 53 3 145 38.4 7,714 39.6
  1. aThe comparison was based on Galgal4 assembly
  2. bThe CNVRs were obtained by aggregating overlapping CNVs that were successfully converted to Galgal4 assembly
  3. cThe percentage was calculated by dividing the number of overlapped CNVRs by the total number of CNVRs in corresponding study
  4. dThe percentage was calculated by dividing the number of overlapped bases by the total bases affected by CNVs in corresponding study
  5. eA union set based on previous studies