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Table 6 List of genes and their putative functions involved in splicing mechanism in P. falciparum

From: A bioinformatic survey of RNA-binding proteins in Plasmodium

Gene name Putative function Common name
PF3D7_0515000 Pre-mRNA-splicing factor Cwc2 PfCwc2
PF3D7_1224900 Splicing factor 3B subunit 6 (SF3B6) PfSF3B6
PF3D7_1420000 Splicing factor 3B subunit 4 (SF3B4) PfSF3B4
PF3D7_0935000 U2 snRNP associated small nuclear ribonucleoprotein B PfsnRPB2-B
PF3D7_1367100 U1 small nuclear ribonucleoprotein 70 kDa PfU1snRNP
PF3D7_1306900 U1 snRNP assocaited small nuclear ribonucleoprotein A PfsnRPBU1-A
PF3D7_1402700 U2 snRNP-associated SURP motif-containing protein PfsnRPB2-2
PF3D7_1326300 Splicing factor homolog PfSfx1
PF3D7_0716000 Splicing factor homolog PfSfx2
PF3D7_1468800 Splicing factor U2AF large subunit B PfU2AF3
PF3D7_1119300 Splicing factor U2AF small subunit B PfU2AF4
PF3D7_1321700 Splicing factor, CC1 like PfRBM39
PF3D7_0209800 Spliceosome RNA helicase DDX39B; alias UAP56 PfUAP56
PF3D7_0812700 U1 small nuclear ribonucleoprotein C (SNRPC) PfSNRPC
PF3D7_0408300 Supraspliceosme complex component -alternative splicing PfZRANB2
PF3D7_0209800 Spliceosome RNA helicase DDX39B; alias UAP56 Pf UAP56
PF3D7_0508700 Pre-mRNA-processing ATP-dependent RNA helicase Prp5 PfPrp5
PF3D7_0518500 ATP-dependent RNA helicase DDX23 (PRP28) PfPrp28
PF3D7_1443800 Mdlc (midlife crisis) or Cwc24p in yeast Pfmdlc
PF3D7_0623600 Splicing factor 1 (SF1) PfSF1
PF3D7_1474500 Splicing factor 3A subunit 1 (PRP-21) PfPrp21
PF3D7_0619900 REPO-1 PfPrp11
PF3D7_0924700 Splicing factor 3a, subunit 3, 60 kDa (SF3A3) PfPrp9
PF3D7_0525000 Putative poly-adenylation factor Ambiguous
PF3D7_1443800 mdlc (midlife crisis) or Cwc24p in yeast Pfmdlc1p
PF3D7_1364300 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 PfPrp16
PF3D7_1030100 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 PfPrp22
PF3D7_0917600 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 PfPrp43
PF3D7_0606500 Polypyrimidine tract-binding protein 3 PfPTBP1
PF3D7_1409800 RNA binding protein Bruno, putative (HoBo) Bruno PfCELF1
PF3D7_0823200 CUG-BP Elav-like family member 3 PfCELF2
PF3D7_1236100 CUGBP, Elav-like family member 2 PfCELF3
PF3D7_1022400 Pre-mRNA-splicing factor SF2 PfSF2
PF3D7_1454000 Splicing factor 45 PfSpf45
PF3D7_0517300 Splicing factor, arginine/serine-rich 1 PfRSrrm1
PF3D7_1004400 Serine/arginine-rich splicing factor 4 PfRSrrm2
PF3D7_1119800 Serine/arginine-rich splicing factor 1 PfRSrrm3
PF3D7_0503300 Serine/arginine-rich SC35-like splicing factor SCL28 PfRSrrm4
PF3D7_1006800 Gbp2p PfRSrrm5
PF3D7_1002400.1 Transformer-2 protein homolog beta isoform 2 (TRA2B) PfRSrrm6
PF3D7_1415300 Nova2 or BTR1 PfNova2
PF3D7_0309800 YT521 PfYT521