Table 6 List of genes and their putative functions involved in splicing mechanism in P. falciparum
From: A bioinformatic survey of RNA-binding proteins in Plasmodium
Gene name | Putative function | Common name |
|---|---|---|
PF3D7_0515000 | Pre-mRNA-splicing factor Cwc2 | PfCwc2 |
PF3D7_1224900 | Splicing factor 3B subunit 6 (SF3B6) | PfSF3B6 |
PF3D7_1420000 | Splicing factor 3B subunit 4 (SF3B4) | PfSF3B4 |
PF3D7_0935000 | U2 snRNP associated small nuclear ribonucleoprotein B | PfsnRPB2-B |
PF3D7_1367100 | U1 small nuclear ribonucleoprotein 70Â kDa | PfU1snRNP |
PF3D7_1306900 | U1 snRNP assocaited small nuclear ribonucleoprotein A | PfsnRPBU1-A |
PF3D7_1402700 | U2 snRNP-associated SURP motif-containing protein | PfsnRPB2-2 |
PF3D7_1326300 | Splicing factor homolog | PfSfx1 |
PF3D7_0716000 | Splicing factor homolog | PfSfx2 |
PF3D7_1468800 | Splicing factor U2AF large subunit B | PfU2AF3 |
PF3D7_1119300 | Splicing factor U2AF small subunit B | PfU2AF4 |
PF3D7_1321700 | Splicing factor, CC1 like | PfRBM39 |
PF3D7_0209800 | Spliceosome RNA helicase DDX39B; alias UAP56 | PfUAP56 |
PF3D7_0812700 | U1 small nuclear ribonucleoprotein C (SNRPC) | PfSNRPC |
PF3D7_0408300 | Supraspliceosme complex component -alternative splicing | PfZRANB2 |
PF3D7_0209800 | Spliceosome RNA helicase DDX39B; alias UAP56 | Pf UAP56 |
PF3D7_0508700 | Pre-mRNA-processing ATP-dependent RNA helicase Prp5 | PfPrp5 |
PF3D7_0518500 | ATP-dependent RNA helicase DDX23 (PRP28) | PfPrp28 |
PF3D7_1443800 | Mdlc (midlife crisis) or Cwc24p in yeast | Pfmdlc |
PF3D7_0623600 | Splicing factor 1 (SF1) | PfSF1 |
PF3D7_1474500 | Splicing factor 3A subunit 1 (PRP-21) | PfPrp21 |
PF3D7_0619900 | REPO-1 | PfPrp11 |
PF3D7_0924700 | Splicing factor 3a, subunit 3, 60Â kDa (SF3A3) | PfPrp9 |
PF3D7_0525000 | Putative poly-adenylation factor | Ambiguous |
PF3D7_1443800 | mdlc (midlife crisis) or Cwc24p in yeast | Pfmdlc1p |
PF3D7_1364300 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 | PfPrp16 |
PF3D7_1030100 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 | PfPrp22 |
PF3D7_0917600 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | PfPrp43 |
PF3D7_0606500 | Polypyrimidine tract-binding protein 3 | PfPTBP1 |
PF3D7_1409800 | RNA binding protein Bruno, putative (HoBo) Bruno | PfCELF1 |
PF3D7_0823200 | CUG-BP Elav-like family member 3 | PfCELF2 |
PF3D7_1236100 | CUGBP, Elav-like family member 2 | PfCELF3 |
PF3D7_1022400 | Pre-mRNA-splicing factor SF2 | PfSF2 |
PF3D7_1454000 | Splicing factor 45 | PfSpf45 |
PF3D7_0517300 | Splicing factor, arginine/serine-rich 1 | PfRSrrm1 |
PF3D7_1004400 | Serine/arginine-rich splicing factor 4 | PfRSrrm2 |
PF3D7_1119800 | Serine/arginine-rich splicing factor 1 | PfRSrrm3 |
PF3D7_0503300 | Serine/arginine-rich SC35-like splicing factor SCL28 | PfRSrrm4 |
PF3D7_1006800 | Gbp2p | PfRSrrm5 |
PF3D7_1002400.1 | Transformer-2 protein homolog beta isoform 2 (TRA2B) | PfRSrrm6 |
PF3D7_1415300 | Nova2 or BTR1 | PfNova2 |
PF3D7_0309800 | YT521 | PfYT521 |