Fig. 7

Heatmap representation of the segmentation scores of the region between positions 3,507,000 and 4,107,000 bp on apple chromosome 2. a Heatmap of segmentation scores with rows ordered in alphabetical order of accession name for the region chromosome 2 from 3,507,000 to 4,107,000 bp. The segmentation values are plotted for each window in the region; these values represent significant changes in read-depth signal. The green highlighted region shows one of the 19 CNVRs located within the region. b Heatmap of segmentation scores with rows ordered by segmentation score for the CNVR on chromosome 2 between positions 3,531,000 and 3,546,000 bp. The resistance gene model (MDP000057795) and the other gene models (MDP000057796 and MDP0000187491) are located above the heat map in their correct position relative to their location within the CNVR. The track above the heatmap displays the location of the gene models found within the CNV (extracted from the Rosaceae genome browser)