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Table 1 Details of the 31 data sets used in the meta-analysis

From: Investigating inter-chromosomal regulatory relationships through a comprehensive meta-analysis of matched copy number and transcriptomics data sets

Code GEO Publication N P Pathology
parr GSE20486 Parris et al. 2010 [24] 97 18616 Breast cancer (Diploid)
crow GSE15134 Crowder et al. 2009 [25] 31 16153 Breast cancer (ER+)
sirc GSE17907 Sircoulomb et al. 2010 [26] 51 14689 Breast cancer (ERBB2 amplified)
myll a Myllykangas et al. 2008 [27] 46 17050 Gastric cancer
junn a Junnila et al. 2010 [28] 10 16844 Gastric cancer
ch.w b Chitale et al. 2009 [29] 91 10285 Lung adenocarcinoma
ch.s b Chitale et al. 2009 [29] 94 10285 Lung adenocarcinoma
hoac GSE20154 Goh et al. 2011 [30] 54 14388 Oesophageal adenocarcinoma
zho GSE29023 Zhou et al. 2012 [31] 115 13697 Multiple myeloma
shai GSE26089 Shain et al. 2012 [32] 68 14201 Pancreatic cancer
vain GSE28403 Vainio et al. 2012 [33] 13 10107 Prostate cancer
bott GSE29211 Bott et al. 2011 [34] 53 10321 Pleural mesothelioma
bekh GSE23720 Bekhouche et al. 2011 [35] 173 13682 Breast cancer (Inflammatory)
chap GSE26863 Chapman et al. 2011 [36] 245 13667 Multiple myeloma
ooi GSE22785 Ooi et al. 2012 [37] 14 10091 Neuroblastoma
brag GSE12668 Braggio et al. 2009 [38] 11 10310 Waldenström’s macroglobulinemia
jons GSE22133 Jönsson et al. 2010 [39] 356 4183 Breast cancer
mura GSE24707 Muranen et al. 2011 [40] 47 4472 Breast cancer
lin1 GSE19915 Lindgren et al. 2010 [41] 72 4965 Urothelial carcinoma
beck GSE17555 Beck et al. 2010 [42] 18 12174 Leiomyosarcoma
toed GSE18166 Toedt et al. 2011 [43] 74 4289 Astrocytic gliomas
ell GSE35191 Ellis et al. 2012 [44] 124 13569 Breast cancer
gra.1 GSE35988 Grasso et al. 2012 [45] 85 12849 Prostate cancer
gra.2 GSE35988 Grasso et al. 2012 [45] 34 12813 Prostate cancer
lenz GSE11318 Lenz et al. 2009 [46] 203 15212 Lymphoma
lin2 GSE32549 Lindgren et al. 2012 [47] 131 8450 Urothelial carcinoma
micc GSE38230 Micci et al. 2013 [48] 12 16657 Vulva squamous cell carcinoma
tayl GSE21032 Taylor et al. 2010 [49] 155 14572 Prostate cancer
coco GSE25711 c Coco et al. 2012 [50] 36 4394 Neuroblastoma
med GSE14079 Medina et al. 2009 [51] 8 6376 Lung cancer
przy GSE54188 Przybyl et al. 2014 [52] 53 17032 Synovial sarcoma
  1. GEO = Gene Expression Omnibus data set reference (http://www.ncbi.nlm.nih.gov/geo/), N = Number of samples, P = Number of matched probes, ahttp://www.cangem.org/, b http: //cbio.mskcc.org/Public/lung_array_data/, cExpression data in ArrayExpress (http://www.ebi.ac.uk/arrayexpress/): E-TABM-38, E-MTAB-161
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