Strain | Sourcea | Clinical/Commensal | MLSTb | Phage presencec | Phage named (%GC) | att sitee | NCBI prophage accession number | ||
---|---|---|---|---|---|---|---|---|---|
I | Q | C | |||||||
2019228G | PathWest | Clinical | h | 1 | 0 | 0 | Â | Â | Â |
1020848 M | PathWest | Clinical | 11 | 2 | 0 | 1 | Mcat7 (43.62 %) | 5’-ATCAAAAAATGG-3’ 5’-AATCAAAAATCT-3’ 5’-TTTTTTATTGGG-3’ | KR093631 |
1028680Â K | PathWest | Clinical | 41 | 1 | 0 | 0 | Â | Â | Â |
1034084Q | PathWest | Clinical | 224 | 1 | 0 | 0 | Â | Â | Â |
2023641Â W | PathWest | Clinical | 4 | 2 | 1 | 0 | Â | Â | Â |
3331584D | PathWest | Clinical | h | 0 | 1 | 0 | Â | Â | Â |
3476642E | PathWest | Clinical | 46 | 1 | 1 | 0 | Â | Â | Â |
3481088Y | PathWest | Clinical | h | 2 | 3 | 0 | Â | Â | Â |
3753746B | PathWest | Clinical | h | 0 | 0 | 1 | Mcat9 (43.94 %) | 5’-TGTGTACATAATTGTGTACATA-3’ | KR093633 |
4789849Â F | PathWest | Clinical | 67 | 1 | 1 | 0 | Â | Â | Â |
5550565E | PathWest | Clinical | h | 3 | 1 | 1 | Mcat32 (42.68Â %) | N/A | KR093656 |
20236154 | PathWest | Clinical | 236 | 1 | 0 | 0 | Â | Â | Â |
20370737 | PathWest | Clinical | 105 | 1 | 0 | 1 | Mcat4 (43.21 %) | 5’-TTATCAATCAGT-3’ | KR093628 |
2040048B | PathWest | Clinical | 230 | 0 | 1 | 0 | Â | Â | Â |
3503282R | PathWest | Clinical | 184 | 2 | 0 | 1 | Mcat16 (42.96 %) | 5’-TTTTTTTAGGGG-3’ | KR093640 |
5004663G | PathWest | Clinical | 224 | 1 | 0 | 0 | Â | Â | Â |
1093063Y | PathWest | Clinical | 230 | 0 | 1 | 0 | Â | Â | Â |
4640032P | PathWest | Clinical | 246 | 1 | 0 | 1 | Mcat15 (42.71 %) | 5’-ATACAAAAAATC-3’ | KR093639 |
2046210Y | PathWest | Clinical | h | 2 | 0 | 0 | Â | Â | Â |
4737718Q | PathWest | Clinical | h | 2 | 0 | 0 | Â | Â | Â |
5012204D | PathWest | Clinical | 250 | 4 | 2 | 1 | Mcat24 (42.74Â %) | N/A | KR093648 |
4840991Â N | PathWest | Clinical | 73 | 1 | 0 | 0 | Â | Â | Â |
2042044P | PathWest | Clinical | h | 0 | 0 | 0 | Â | Â | Â |
2041717D | PathWest | Clinical | h | 0 | 0 | 0 | Â | Â | Â |
5008863 L | PathWest | Clinical | h | 1 | 1 | 1 | Mcat19 (42.39 %) | 5’-ATTTTTTATATT-3’ | KR093643 |
1583718S | PathWest | Clinical | 234 | 2 | 1 | 0 | Â | Â | Â |
5267783B | PathWest | Clinical | 234 | 3 | 1 | 0 | Â | Â | Â |
4431503Â J | PathWest | Clinical | 118 | 3 | 2 | 0 | Â | Â | Â |
1111988H | PathWest | Clinical | h | 1 | 2 | 0 | Â | Â | Â |
5021467Y | PathWest | Clinical | 224 | 1 | 0 | 0 | Â | Â | Â |
5560626Q | PathWest | Clinical | h | 1 | 0 | 0 | Â | Â | Â |
2047127Â K | PathWest | Clinical | 240 | 1 | 0 | 0 | Â | Â | Â |
5021466Â N | PathWest | Clinical | 224 | 1 | 0 | 0 | Â | Â | Â |
2041417P | PathWest | Clinical | h | 3 | 1 | 1 | Mcat3 (43.79 %) | 5'-AAAAAAATCAAAG-3’ | KR093627 |
1098655R | PathWest | Clinical | 230 | 1 | 1 | 0 | Â | Â | Â |
5157102Y | PathWest | Clinical | 251 | 1 | 0 | 0 | Â | Â | Â |
4849094R | PathWest | Clinical | 248 | 1 | 0 | 0 | Â | Â | Â |
2050675Y | PathWest | Clinical | h | 1 | 0 | 0 | Â | Â | Â |
5553245S | PathWest | Clinical | h | 1 | 0 | 0 | Mcat13 (42.77 %) | 5’-TTTTTCAGCTTC-3’ | KR093637 |
5/131/1 | KOMRP | Commensal | 217 | 1 | 0 | 0 | Â | Â | Â |
23/41/1 | KOMRP | Commensal | 235 | 2 | 0 | 0 | Â | Â | Â |
39/355/1 | KOMRP | Commensal | 62 | 1 | 1 | 1 | Mcat2 (43.64 %) | 5’-TTTCAAATTTTA-3’ | KR093626 |
41/539/1 | KOMRP | Commensal | h | 1 | 0 | 1 | Mcat22 (42.48 %) | 5’-AAAAATTTGGTT-3’ | KR093646 |
3/7/1 | KOMRP | Commensal | 242 | 1 | 1 | 0 | Â | Â | Â |
102/402/3 | KOMRP | Commensal | h | 1 | 3 | 0 | Â | Â | Â |
91/291/2 | KOMRP | Commensal | h | 2 | 0 | 1 | Mcat20 (42.71Â %) | N/A | KR093644 |
78/191/1 | KOMRP | Commensal | h | 4 | 0 | 1 | Mcat31 (42.68Â %) | N/A | KR093655 |
96/281/2 | KOMRP | Commensal | 259 | 1 | 0 | 0 | Â | Â | Â |
26/133/1 | KOMRP | Commensal | 70 | 2 | 0 | 1 | Mcat23 (42.65Â %) | N/A | KR093647 |
129/414/4 | KOMRP | Commensal | 209 | 1 | 0 | 0 | Â | Â | Â |
130/563/4 | KOMRP | Commensal | 74 | 2 | 0 | 0 | Â | Â | Â |
60/120/1 | KOMRP | Commensal | 64 | 1 | 0 | 1 | Mcat11 (43.92 %) | 5’-TAAAAAAAATAAA-3’ | KR093635 |
105/305/2 | KOMRP | Commensal | h | 0 | 1 | 0 | Â | Â | Â |
113/391/3 | KOMRP | Commensal | 232 | 1 | 0 | 0 | Â | Â | Â |
20/122/1 | KOMRP | Commensal | 235 | 2 | 0 | 0 | Â | Â | Â |
79/220/2 | KOMRP | Commensal | h | 1 | 2 | 0 | Â | Â | Â |
29/50/1 | KOMRP | Commensal | 241 | 0 | 1 | 0 | Â | Â | Â |
23/95/1 | KOMRP | Commensal | 233 | 1 | 0 | 0 | Â | Â | Â |
107/374/3 | KOMRP | Commensal | 229 | 2 | 0 | 0 | Â | Â | Â |
76/204/3 | KOMRP | Commensal | h | 1 | 0 | 0 | Â | Â | Â |
73/187/1 | KOMRP | Commensal | 254 | 0 | 1 | 1 | Mcat10 (44.14 %) | 5’-TAAAAAAAATAAA-3’ | KR093634 |
24/92/1 | KOMRP | Commensal | 64 | 0 | 0 | 1 | Mcat12 (43.56 %) | 5’-TTATTTTTAAAA-3’ | KR093636 |
78/325/3 | KOMRP | Commensal | 256 | 2 | 0 | 0 | Â | Â | Â |
78/205/2 | KOMRP | Commensal | h | 5 | 0 | 1 | Mcat30 (42.68Â %) | N/A | KR093654 |
105/417/3 | KOMRP | Commensal | h | 1 | 1 | 0 | Â | Â | Â |
25/44/1 | KOMRP | Commensal | h | 1 | 1 | 0 | Â | Â | Â |
77/338/2 | KOMRP | Commensal | 50 | 0 | 2 | 0 | Â | Â | Â |
16/38/1 | KOMRP | Commensal | 157 | 1 | 0 | 1 | Mcat26 (42.22Â %) | N/A | KR093650 |
64/108/1 | KOMRP | Commensal | 140 | 0 | 2 | 1 | Mcat17 (42.46 %) | 5’-ACCATTTTTTAA-3’ 5’-TTTTTTTCATTTT-3’ | KR093641 |
3/22/1 | KOMRP | Commensal | 242 | 1 | 0 | 0 | Â | Â | Â |
80/196/2 | KOMRP | Commensal | h | 2 | 1 | 0 | Â | Â | Â |
15/36/1 | KOMRP | Commensal | 233 | 1 | 0 | 0 | Â | Â | Â |
BBH18 | Sputum sample, patient with COPD, Holland GCA_000092265.1 | Clinical | 128 | 1 | 0 | 0 | Â | Â | Â |
A16 | Frozen stocks, saliva, Australia | Commensal | h | 0 | 0 | 0 | Mcat28 (42.24 %) | 5’-TGTGTACATAATTGTGTACATA-3’ | KR093652 |
5’-AAAAAACTTAAC-3’ | |||||||||
ATCC43617f | Trans-tracheal aspirate from coal miner with bronchitis | Clinical | 25 | 1 | 1 | 1 | Mcat5 (43.30Â %) | N/A | KR093629 |
ATCC43617af | Trans-tracheal aspirate from coal miner with bronchitis | Clinical | 25 | 1 | 1 | 1 | Mcat6 (43.08Â %) | N/A | KR093630 |
BE4L | PathWest | Clinical | h | 2 | 0 | 1 | Mcat25 (42.61Â %) | Â | Â |
MC4S | Alexander project | Clinical | 188 | 1 | 2 | 1 | Mcat8 (41.40 %) | 5’-CTTAAAAAAATA-3’ | KR093632 |
MC24 | Alexander project | Clinical | h | 1 | 0 | 0 | Â | Â | Â |
MC1 | Alexander project | Clinical | 131 | 1 | 0 | 0 | Â | Â | Â |
BE5 | PathWest | Clinical | h | 1 | 1 | 1 | Mcat18 (42.26 %) | 5’-CATTAATCAAAT-3’ | KR093642 |
A6 | Frozen stocks, saliva, Australia | Commensal | 3 | 6 | 0 | 1 | Mcat29 (42.23Â %) | N/A | KR093653 |
T6 | Sputum, children 3 – 6 years, Taiwan | Commensal | h | 1 | 1 | 0 |  |  |  |
T12 | Sputum, children 3 – 6 years, Taiwan | Commensal | h | 2 | 1 | 0 |  |  |  |
T4 | Sputum, children 3 – 6 years, Taiwan | Commensal | 191 | 1 | 0 | 0 |  |  |  |
K117 | Hospital isolate, Perth, Australia | Clinical | 40 | 1 | 0 | 0 | Â | Â | Â |
12P80B1g | GCA_000192965.2 | Clinical | 185 | 1 | 0 | 0 | Â | Â | Â |
O35Eg | GCA_000193085.2 | Clinical | 146 | 0 | 0 | 0 | Â | Â | Â |
46P47B1g | GCA_000192945.2 | Clinical | h | 1 | 0 | 1 | Mcat21 (42.26Â %) | N/A | KR093645 |
101P10B1g | GCA_000193065.2 | Clinical | 218 | 1 | 1 | 0 | Â | Â | Â |
103P14B1g | GCA_000192925.2 | Clinical | 187 | 1 | 1 | 1 | Mcat14 (43.39Â %) | N/A | KR093638 |
7169g | GCA_000192905.2 | Clinical | 82 | 3 | 2 | 0 | Â | Â | Â |
BC1g | GCA_0000192985.2 | Clinical | 216 | 2 | 1 | 0 | Â | Â | Â |
BC7g | GCA_000193005.2 | Clinical | 217 | 1 | 0 | 0 | Â | Â | Â |
BC8g | GCA_0000193025.2 | Clinical | 162 | 1 | 1 | 1 | Mcat1 (43.62 %) | 5’-TTTCAAATTTTA-3’ | KR093625 |
CO72g | GCA_000193045.2 | Clinical | 199 | 2 | 0 | 1 | Mcat27 (42.57 %) | 5’-TGTGTACATAATTGTGTACATA-3’ | KR093651 |
RH4g | GCA_000302495.1 | Clinical | h | 0 | 0 | 1 | Â | Â | Â |