Table 3 Gene Ontology (GO) over-representation analysis, showing those GO categories significantly enriched (at FDR q-value <0.05) in galled leaf
Gene category | Number in Arabidopsis genome | Unique to galled (816.1 vs 816.3) | p-value (FDR) |
|---|---|---|---|
All genes with annotated A. thaliana ortholog | 37767 | 666 | Â |
GO:0006270 DNA replication initiation (replication initiation/All) | 13 (0.0003) | 6 (0.009) | 0.00000059 (0.00062) |
GO:0006260 DNA replication (DNA replication/All) | 117 (0.0031) | 11 (0.016) | 0.0000027 (0.0014) |
GO:0009791 post-embryonic development (Post-embryonic/All) | 705 (0.018) | 29 (0.043) | 0.000042 (0.015) |
GO:0006825 copper ion transport (copper/All) | 23 (0.0006) | 5 (0.0075) | 0.00011 (0.027) |
GO:0009733 response to auxin stimulus (auxin/All) | 360 (0.0095) | 18 (0.027) | 0.00013 (0.027) |
GO:0006259 DNA metabolic process (DNA metabolic/All) | 405 (0.0107) | 19 (0.028) | 0.00018 (0.032) |
GO:0007017 microtubule-based process (microtubule/All) | 114 (0.003) | 9 (0.013) | 0.0003 (0.046) |