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Table 3 Gene Ontology (GO) over-representation analysis, showing those GO categories significantly enriched (at FDR q-value <0.05) in galled leaf

From: The transcriptional landscape of insect galls: psyllid (Hemiptera) gall formation in Hawaiian Metrosideros polymorpha (Myrtaceae)

Gene category Number in Arabidopsis genome Unique to galled (816.1 vs 816.3) p-value (FDR)
All genes with annotated A. thaliana ortholog 37767 666  
GO:0006270 DNA replication initiation (replication initiation/All) 13 (0.0003) 6 (0.009) 0.00000059 (0.00062)
GO:0006260 DNA replication (DNA replication/All) 117 (0.0031) 11 (0.016) 0.0000027 (0.0014)
GO:0009791 post-embryonic development (Post-embryonic/All) 705 (0.018) 29 (0.043) 0.000042 (0.015)
GO:0006825 copper ion transport (copper/All) 23 (0.0006) 5 (0.0075) 0.00011 (0.027)
GO:0009733 response to auxin stimulus (auxin/All) 360 (0.0095) 18 (0.027) 0.00013 (0.027)
GO:0006259 DNA metabolic process (DNA metabolic/All) 405 (0.0107) 19 (0.028) 0.00018 (0.032)
GO:0007017 microtubule-based process (microtubule/All) 114 (0.003) 9 (0.013) 0.0003 (0.046)
  1. Genes in GO:0009733 response to auxin stimulus (bold) are listed in Table 2