ID | M.O. | #Promoters | #Human | #Promoters | #Human | #Promoters | #NotReported | Total | Total |
|---|
Pig-specific | Genes(1) | Mouse-specific (2) | Genes(2) | Both | Promoters | #Promoters | #Genes |
|---|
(1) |
|---|
X | X | 13033 [17%] | 6215 [39%] | 7945 [10%] | 3483 [21%] | 41606 [55%] | 12503 [17%] | 75087 | 15847 |
X | - | 1539 [22%] | 754 [24%] | 700 [10%] | 364 [11%] | 2256 [32%] | 2473 [35%] | 6968 | 3059 |
- | - | 19621 [19%] | - | 11045 [10%] | - | 37167 [36%] | 34939 [34%] | 102772 | - |
Total | 34193 [19%] | 6969 [37%] | 19690 [11%] | 3847 [20%] | 81029 [44%] | 49915 [27%] | 184827 | 18906 |
- Table shows the statistics regarding the mapping of the FANTOM5 human promoters to two target genomes. The number of human promoters mapped specifically and unequivocally to pig or mouse are indicated in columns #Promoters Pig-specific and #Promoters Mouse-specific respectively for distinct gene subsets: (i) human promoters which were assigned an associated EntrezGene ID (as defined in [9] i.e. within at most 500 bp of the 5’ end of the gene and located on the same strand) for which a known mouse ortholog exists (first row), (ii) those promoters with an associated gene but no known mouse ortholog (2nd row) and (iii) promoters for which there is no gene association within the 500 bp window (3rd row). (1) and (2) refer to species pig and mouse respectively. M.O. stands for mouse ortholog. A cross indicates the presence of the given feature i.e. presence of an associated EntrezGene ID (column ID) or a known mouse ortholog (column M.O.). Numbers of human genes associated to a given set of mapped promoters are indicated in columns denoted #HumanGenes when applicable. The columns entitled ‘#Promoters both’ and ‘#NotReported promoters’ show the number of promoters mapped to both species and the number of promoters not reported (including unmapped and multimapped promoters) respectively. All percentages are indicated in square brackets. The final two columns show the total number of promoters and genes for each category considered (i.e. each row)
