ID | M.O. | #Promoters | #Mouse | #Promoters | #Mouse | #Promoters | #NotReported Promoters | Total | Total |
|---|
Pig-specific | Genes(1) | Human-specific (2) | Genes(2) | Both | #Promoters | #Genes |
|---|
(1) |
|---|
X | X | 4182 [8%] | 2190 [13%] | 7544 [14%] | 3503 [22%] | 22742 [44%] | 16891 [33%] | 51359 | 15777 |
X | - | 526 [9%] | 132 [5%] | 655 [12%] | 107 [4%] | 1535 [29%] | 2626 [49%] | 5342 | 2629 |
- | - | 5104 [8%] | - | 6630 [11%] | - | 20057 [34%] | 27785 [47%] | 59576 | - |
Total | 9812 [8%] | 2322 [13%] | 14829 [13%] | 3610 [20%] | 44334 [38%] | 47302 [41%] | 116277 | 18406 |
- Table shows the statistics regarding the mapping of the FANTOM5 mouse promoters to two target genomes. The number of mouse promoters mapped specifically and unequivocally to pig or human are indicated in columns #Promoters Pig-specific and #Promoters Human-specific respectively for distinct gene subsets: (i) mouse promoters which were assigned an associated EntrezGene ID (as defined in [9] i.e. within at most 500 bp of the 5’ end of the gene and located on the same strand) for which a known human ortholog exists (first row), (ii) those promoters with an associated gene but no known human ortholog (2nd row) and (iii) promoters for which there is no gene association within the 500 bp window (3rd row). (1) and (2) refer to species pig and human respectively. M.O. stands for murine gene with human ortholog. A cross indicates the presence of the given feature i.e. presence of an associated EntrezGene ID (column ID) or a known human ortholog (column M.O.). Numbers of mouse genes associated to a given set of mapped promoters are indicated in columns denoted #MouseGenes when applicable. The columns entitled ‘#Promoters both’ and ‘#NotReported promoters’ show the number of promoters mapped to both species and the number of promoters not reported (including unmapped and multimapped promoters) respectively. All percentages are indicated in square brackets. The final two columns show the total number of promoters and genes for each category considered (i.e. each row)
