Table 1 Metrics describing the transcriptome alignments

F1_XP_RZ

67,895,442

37,480,868 (55 %)

20,409,963 (54 %)

17,070,905 (46 %)

28,766,542 (77 %)

26,655,176 (71 %)

8,714,326 (23 %)

F1_XP_PA

65,605,318

38,878,773 (59 %)

21,731,643 (56 %)

17,147,130 (44 %)

29,122,168 (75 %)

27,271,540 (70 %)

9,756,605 (25 %)

F1_RZ

60,479,632

21,002,025 (35 %)

11,311,755 (54 %)

9,690,270 (46 %)

15,677,600 (75 %)

14,192,682 (68 %)

5,324,425 (25 %)

F1_PA

63,555,450

37,671,216 (59 %)

20,881,499 (55 %)

16,789,717 (45 %)

28,690,598 (76 %)

26,499,330 (70 %)

8,980,618 (24 %)

F2_RZ

43,733,908

24,067,157 (55 %)

13,121,886 (55 %)

10,945,271 (45 %)

18,560,162 (77 %)

17,136,240 (71 %)

5,506,995 (23 %)

F2_PA

60,656,692

35,610,912 (59 %)

19,661,565 (55 %)

15,949,347 (45 %)

27,281,408 (77 %)

25,371,888 (71 %)

8,329,504 (23 %)

F3_RZ

54,693,906

25,673,135 (47 %)

13,831,002 (54 %)

11,842,133 (46 %)

19,086,154 (74 %)

17,431,254 (68 %)

6,586,981 (26 %)

F3_PA

60,211,066

35,007,336 (58 %)

19,424,414 (55 %)

15,582,922 (45 %)

26,507,306 (76 %)

24,701,646 (71 %)

8,500,030 (24 %)