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Table 6 Comparison of the published genome annotation with de novo annotations based on RNAseq alignments

From: Molecular tools for studying the major malaria vector Anopheles funestus: improving the utility of the genome using a comparative poly(A) and Ribo-Zero RNAseq analysis

 

AfunF1.2a

Poly(A) (not in refb)

Ribo-Zero (not in refb)

Scaffolds with annotation

622

587 (415)

727 (645)

Genes

13,757

11,395 (1,000)

15,914 (4,744)

Transcripts

13,898

15,605 (1,039)

20,317 (4,831)

  1. aExcludes mitochondrial genome
  2. bFeatures that do not overlap any in the reference annotation
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BMC Genomics

ISSN: 1471-2164

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