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Table 1 Haplotype block chromosomal distribution and characteristics

From: Genomic population structure and prevalence of copy number variations in South African Nguni cattle

CHR CHRLN SNP HPB MinL MaxL AvL HPBLn PCN
1 161428367 2637 43 2809 199730 10561715 4330346 2.68
2 141965563 1691 33 1641 190889 77656.88 2485053 1.75
3 126844711 1716 38 108 192734 84265.08 3117846 2.46
4 123809850 1358 22 3406 198460 99861.67 2097117 1.69
5 125249322 1349 21 148 191441 80559.43 1691769 1.35
6 122519025 1438 21 2660 197610 82146.24 1725092 1.41
7 113029157 1328 31 1969 199428 88447.73 2653463 2.35
8 116846264 1306 30 84 197993 95895.72 2781006 2.38
9 108503706 1253 23 449 173897 61200.77 1346440 1.24
10 105982576 1059 22 10923 194738 123553.18 2718192 2.56
11 109987751 1071 15 9816 191201 96847.67 1452730 1.32
12 85119472 2140 25 620 194123 75741.70 1817826 2.14
13 84213851 1220 16 382 196561 57314.19 917043 1.09
14 81216349 1121 25 108 160297 48024.25 1152607 1.42
15 84472747 1015 10 6788 176328 73205.13 585651 0.69
16 77710258 852 22 178 188386 74494.59 1638903 2.11
17 76280064 987 12 2032 194454 65094.33 781144 1.02
18 65811054 769 13 5603 193175 63212.5 758563 1.15
19 64845320 864 14 1014 197085 82993.29 1161920 1.79
20 75686341 756 12 1527 195895 72733.91 800085 1.06
21 69078422 755 10 12797 173099 86163.67 775483 1.12
22 61598339 819 9 9271 176207 49994 399961 0.65
23 52334015 1980 11 2414 142956 48732.73 536071 1.02
24 64508398 1950 12 95 195261 65562.08 786757 1.22
25 44081797 1650 11 1343 180067 56038.46 616434 1.40
26 51826547 2017 11 281 187010 85746.2 857473 1.65
27 48460478 1784 8 151 191285 70888.75 567118 1.17
28 45964680 1890 10 675 140455 41588.63 332719 0.72
29 51812796 1538 11 3683 172838 64737.73 712126 1.37
Tot   40313 541 84 199730 79686.58 41596938  
  1. Chromosome number (CHR), chromosome length (CHRLN), number of SNPs (SNP) and HPBs (HPB), minimum length (MinL), maximum length (MaxL), average length (AvL) and total length (HPBLN) of HPBs and percentage of chromosome covered by HPBs (PCN)