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Table 2 Summary statistics of four CNV detection filtering models

From: Genomic population structure and prevalence of copy number variations in South African Nguni cattle

MDL

GCWF

DLRS

GCMDL

ANMLs

QCPS

ANMLsCNVs

CNVRs

AvL

1

0.040

0.300

Yes

492

379

281

353

259283.62

2

0.040

0.300

No

492

326

231

334

270939.14

3

0.070

0.318

Yes

492

453

361

501

237869.23

4

0.070

0.318

No

492

462

352

486

240572.18

  1. The stringencys (GCWF and DLRS), the number of animals (ANMLs), the number of animals that passed (QCPS), the number of animals with CNVs present in their genome (ANMLsCNVs), the number of CNVRs and the average length (AvL) of the CNVs identified within Nguni cattle