Genomic population structure and prevalence of copy number variations in South African Nguni cattle

BMC Genomics

Table 3 Chromosomal distribution of CNVs identified in 492 Nguni cattle

CHR	CNVRs	CNVLN	PERCN	MinL	MaxL	AvL
1	34	4533994	2.81	36419	680994	133352.76
2	16	1884357	1.33	44214	260334	117772.31
3	19	4020748	3.17	53857	949810	211618.32
4	23	3218422	2.60	48441	397435	139931.39
5	15	1655058	1.32	47847	257875	110337.20
6	25	4303075	3.51	31128	953806	172123.00
7	11	1792440	1.59	52476	306135	162949.09
8	6	794463	0.68	76217	237689	132410.50
9	11	1230570	1.13	30336	289059	111870.00
10	7	822052	0.78	44415	184185	117436.00
11	13	1265163	1.15	52654	199903	97320.23
12	19	2775332	3.26	48596	392714	146070.11
13	6	1295356	1.54	86589	522669	215892.67
14	12	2133059	2.63	48512	741197	177754.92
15	11	1539814	1.82	51632	390973	139983.09
16	10	1379434	1.78	40032	242142	137943.40
17	10	2570441	3.37	74327	1285287	257044.10
18	3	298969	0.45	63682	161641	99656.33
19	3	415596	0.64	106928	182010	138532.00
20	11	1615406	2.13	49902	378113	146855.09
21	9	964270	1.40	42434	156070	107141.11
22	6	1942282	3.15	73778	1171794	323713.67
23	4	506937	0.97	42345	211284	126734.25
24	12	1744861	2.70	38738	343135	145405.08
25	4	1369746	3.11	66262	1041448	342436.50
26	11	1958085	3.78	73168	518655	178007.73
27	7	784830	1.62	50958	261955	112118.57
28	7	1354237	2.95	117087	414660	193462.43
29	9	1179028	2.28	54840	367944	131003.11
Total	334	51348025		30336	1285287	153736.60

CNVR count (CNVRs), total length (CNV,LN), percentage of chromosome length (PERCN) and minimum (MinL) maximum (MaxL) and average (AvL) lengths of CNVRs identified on each of the 29 Btau chromosomes of 492 Nguni cattle

ISSN: 1471-2164