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Table 3 Chromosomal distribution of CNVs identified in 492 Nguni cattle

From: Genomic population structure and prevalence of copy number variations in South African Nguni cattle

CHR CNVRs CNVLN PERCN MinL MaxL AvL
1 34 4533994 2.81 36419 680994 133352.76
2 16 1884357 1.33 44214 260334 117772.31
3 19 4020748 3.17 53857 949810 211618.32
4 23 3218422 2.60 48441 397435 139931.39
5 15 1655058 1.32 47847 257875 110337.20
6 25 4303075 3.51 31128 953806 172123.00
7 11 1792440 1.59 52476 306135 162949.09
8 6 794463 0.68 76217 237689 132410.50
9 11 1230570 1.13 30336 289059 111870.00
10 7 822052 0.78 44415 184185 117436.00
11 13 1265163 1.15 52654 199903 97320.23
12 19 2775332 3.26 48596 392714 146070.11
13 6 1295356 1.54 86589 522669 215892.67
14 12 2133059 2.63 48512 741197 177754.92
15 11 1539814 1.82 51632 390973 139983.09
16 10 1379434 1.78 40032 242142 137943.40
17 10 2570441 3.37 74327 1285287 257044.10
18 3 298969 0.45 63682 161641 99656.33
19 3 415596 0.64 106928 182010 138532.00
20 11 1615406 2.13 49902 378113 146855.09
21 9 964270 1.40 42434 156070 107141.11
22 6 1942282 3.15 73778 1171794 323713.67
23 4 506937 0.97 42345 211284 126734.25
24 12 1744861 2.70 38738 343135 145405.08
25 4 1369746 3.11 66262 1041448 342436.50
26 11 1958085 3.78 73168 518655 178007.73
27 7 784830 1.62 50958 261955 112118.57
28 7 1354237 2.95 117087 414660 193462.43
29 9 1179028 2.28 54840 367944 131003.11
Total 334 51348025   30336 1285287 153736.60
  1. CNVR count (CNVRs), total length (CNV,LN), percentage of chromosome length (PERCN) and minimum (MinL) maximum (MaxL) and average (AvL) lengths of CNVRs identified on each of the 29 Btau chromosomes of 492 Nguni cattle