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Fig. 3 | BMC Genomics

Fig. 3

From: Determining multiallelic complex copy number and sequence variation from high coverage exome sequencing data

Fig. 3

Effects of sequencing centre and batch size on copy number clustering. The histograms show normalised sequence depth coverage data for the beta-defensin region for sub-Saharan African samples. X-axis values represent raw mean SVD-ZRPKM values a) BCM sequencing centre, n = 81 (15 YRI, 57 LWK, 9 ASW). b) BGI sequencing centre, n = 172 (26 YRI, 3 LWK, 25 GWD, 43 MSL, 47 ESN, 5 ASW, 23 ACB), with curved lines indicating the Gaussian mixture model used to call integer copy number

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BMC Genomics

ISSN: 1471-2164

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