Table 1 Summary of TUV86-2 colonization QTLs in ARI BXD micea
Name of mapped trait (Phenotype) | Chr (mm9b) | Peak LRS | Genetic marker(s) associated with peak locus | Location of genetic markers (Mb) |
|---|---|---|---|---|
Colonization one day after infection | 9 | 20.19c | gnf09.010.169, rs13480073, and mCV24962297 | 13.23–15.69 |
14 | 13.84 | rs13482392, gnf14.114.290, rs13482396 | 118.97–119.71 | |
Colonization two days after infection | 9 | 16.12 | gnf09.010.169 | 13.23–25.69 |
14 | 12.09 | rs13482396, gnf14.085.610 and rs3707842 | 91.32–120.03 | |
Colonization four days after infection | 9 | 12.29 | gnf09.010.169, rs13480073, mCV24962297 | 13.23–25.69 |
Difference in colonization between day two and one after infection | 13 | 12.05 | rs6209128 and rs3023086 | 52.86–53.52 |
Difference in colonization between day three and one after infection | 7 | 13.36 | rs6206014 | 47.86 |
18 | 11.98 | rs3718618 and rs3669949 | 69.37–69.9 | |
19 | 12.99 | rs13483513, gnf19.005.316, rs4232041 and rs4232042 | 3.41–10.15 | |
Difference in colonization between day four and one after infection | 5 | 12.86 | rs13478413 and rs3688859 | 98.23–100.05 |
17 | 11.6 | rs13483110 | 76.56 | |
Difference in colonization between day three and two after infection | 4 | 15.52 | rs3719891–rs6358921 | 140.88–150.45 |
10 | 12.04 | rs13459120, rs13480580 | 35.75–36.17 | |
15 | 12.02 | rs4230714–rs3701428 | 44.2–55.00 | |
Difference in colonization between day four and two after infection | 1 | 11.66 | rs13475818 and UT_1_38.719268 | 38.07 |
15 | 11.28 | rs3717268 and rs13482709 | 90.7–91.5 | |
X | 16.64 | rs13483746, rs13483748 and rs13483736 | 44.68–48.08 | |
Difference in colonization between day four and three after infection | 12 | 11.17 | rs13481566–rs13481579 | 85.87–89.93 |
Overall strain specific variation in pattern of colonization across BXD strains (Linear slopes of medians) | 17 | 12.47 | rs13483110 | 76.5 |
Overall strain specific variation in pattern of colonization across BXD strains (Polynomial slopes of medians) | X | 12.17 | rs13483770, gnfX.044.260, rs13483785, rs13483786 | 56.48–61.86 |