Matrix name | Number of loci | Length (amino acids) | Missing data (%) | Criteria of locus selection |
---|---|---|---|---|
Total1080 | 1080 | 385,669 | 24.15 | All loci that after trimming and filtering of paralogs |
TaxaMin30 | 609 | 199,667 | 20.44 | Loci with at least 30 taxa present |
TaxaMin33 | 162 | 44,749 | 20 | Loci with at least 33 taxa present |
TaxaMin35 | 88 | 31,989 | 13.89 | Loci with at least 35 taxa present |
60Boot | 55 | 37,682 | 25.92 | Average locus tree bootstrap 60 or more |
MareMatrix | 143 | 35,030 | 20.02 | MARE (Misof et al. 2013) algorithm filtering with alpha at 3.15 |
Slow108 | 108 | 33,580 | 18.91 | 10Â % of the most slowly evolving loci |
LowLB | 171 | 60,397 | 22 | Low LB scores in the outgroups, sponge, and ctenophore |
Saturation108 | 108 | 36,954 | 19.78 | 10Â % of the least saturated loci |
Best108 | 108 | 41,808 | 15.55 | 10Â % of loci scoring best in taxon occupancy, saturation, rate of evolution, average bootstrap, and LB scores |
NoOutgr | 143 | 35,022 | 18.49 | As MareMatrix but realigned without Monosiga and Salpingoeca outgroups |
NoAmphi | 143 | 35,032 | 19.75 | As MareMatrix but realigned without the sponge Amphimedon |
NoOutgrAmphi | 143 | 35,009 | 18.13 | As MareMatrix but realigned without the sponge and the outgroups |