Table 3 The 35 most expressed transcripts in S. pomifera leaf trichomes, along with their length, expression in trichomes (in FPKM values), top BLAST NR hit, % identity with the top hit and its GO annotation
S. pomifera transcript | Length | FPKM | Top BLAST NR hit | % identity | GO annotation |
|---|---|---|---|---|---|
Unigene34508 | 248 | 30,475.2 | Hypothetical protein NitaMp027 [TOBAC] | 99 | GO:0005739 |
Unigene5960 | 726 | 11,636.4 | No hit | ||
CL3171.Contig2 | 980 | 10,338.5 | Predicted: ribulose bisphosphate carboxylase small chain, chloroplastic-like [EUCGR] | 75 | GO:0019253 |
CL2955.Contig2 | 677 | 8953.6 | No hit | ||
CL8497.Contig1 | 706 | 7747.5 | Lipid transfer protein [SESIN] | 81 | GO:0008289 |
Unigene34505 | 997 | 6766.4 | Predicted: uncharacterized protein LOC105170030 [SESIN] | 66 | GO:0044464 |
CL9261.Contig1 | 1266 | 6323.3 | Predicted: GDSL esterase/lipase At5g33370-like [SESIN] | 78 | GO:0006629 |
Unigene33614 | 1136 | 5655.3 | SMLII [SALMI] | 72 | |
CL3502.Contig4 | 560 | 5539.9 | Lipid transfer protein 2 [SALMI] | 93 | GO:0006810 |
Unigene10249 | 266 | 5028.6 | Lipid transfer protein 1 [SALMI] | 85 | |
Unigene34506 | 679 | 4980.5 | No hit | ||
CL2203.Contig2 | 913 | 4616.1 | Pathogenesis-related protein 10 [SALMI] | 85 | GO:0009607 |
CL3171.Contig3 | 831 | 4219.9 | Predicted: ribulose bisphosphate carboxylase small chain, chloroplastic-like [EUCGR] | 75 | GO:0019253 |
CL7758.Contig2 | 672 | 4140.8 | Chlorophyll a/b-binding protein, partial [Schiedea haleakalensis] | 97 | GO:0046872 |
CL4643.Contig2 | 332 | 4047.4 | Predicted: photosystem II 10 kDa polypeptide, chloroplastic [SESIN] | 85 | GO:0015979 |
CL1963.Contig2 | 569 | 3695.1 | No hit | ||
Unigene19442 | 829 | 3596.8 | Putative metallothionin 2a [SALMI] | 95 | GO:0046872 |
Unigene5947 | 858 | 3446.2 | Histone H3.3 [ARATH] | 100 | GO:0000786 |
Unigene31727 | 274 | 3056.0 | BnaC06g21170D [BRANA] | 91 | GO:0016023 |
CL5332.Contig1 | 791 | 2943.3 | No hit | ||
CL1258.Contig1 | 1538 | 2773.7 | Chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase [PLESU] | 87 | GO:0005524 |
CL495.Contig1 | 2029 | 2742.6 | Predicted: uncharacterized protein LOC104647985 [SOLLC] | 54 | |
CL1454.Contig2 | 1262 | 2666.7 | Predicted: dehydration-responsive protein RD22 [SESIN] | 62 | |
CL2498.Contig2 | 763 | 2658.0 | Predicted: probable thionin-2.4 [CAMSA] | 68 | GO:0006952 |
Unigene22580 | 532 | 2506.2 | Predicted: chlorophyll a-b binding protein, chloroplastic [NICTO] | 93 | GO:0046872 |
Unigene29603 | 788 | 2494.0 | Non-specific lipid-transfer protein 3 [ARATH] | 50 | GO:0009737 |
Unigene34507 | 653 | 2393.6 | Predicted: photosystem I reaction center subunit VI, chloroplastic-like [SESIN] | 93 | GO:0010287 |
CL2671.Contig2 | 511 | 2357.7 | Predicted: probable protein Pop3 [SESIN] | 49 | |
Unigene32013 | 334 | 2357.0 | Chloroplast photosystem II 10 kDa protein, partial [ARAHY] | 94 | GO:0015979 |
Unigene10346 | 336 | 2309.4 | 1-hydroxy-2-methyl-butenyl 4-diphosphate reductase [CATRO] | 43 | |
CL182.Contig3 | 3830 | 2269.2 | Sabinene synthase, partial [S. pomifera] | 100 | GO:0005525 |
CL9337.Contig1 | 2282 | 2183.6 | Cinnamoyl CoA reductase [SALMI] | 93 | GO:0009809 |
Unigene10272 | 1075 | 2181.4 | Predicted: photosystem I reaction center subunit XI, chloroplastic [SESIN] | 93 | GO:0010287 |
Unigene34510 | 622 | 2160.2 | Phytosulfokine precursor [AVIMR] | 62 | GO:0007275 |
Unigene32188 | 693 | 2132.8 | Predicted: chlorophyll a-b binding protein 1D-like [NELNU] | 96 | GO:0046872 |