Table 1 Summary of Illumina sequencing and transcriptome assemblies for RNA-Seq libraries
Indcued time | Tissues | Reads | Length | Total bases | Mapping reads | Unique reads | Unigenes | SRA experiment IDs |
|---|---|---|---|---|---|---|---|---|
0Â day | root | 54,802,994 | 100,100 | 5,480,299,400 | 46,616,140 | 38,539,562 | 19,524 | SRX758350 |
stem | 62,654,934 | 100,100 | 6,265,493,400 | 53,955,686 | 44,640,828 | 19,207 | SRX758356 | |
leaf | 62,304,990 | 100,100 | 6,230,499,000 | 53,976,979 | 45,581,048 | 18,886 | SRX758362 | |
1Â day | root | 53,367,552 | 100,100 | 5,336,755,200 | 44,893,957 | 36,983,148 | 19,948 | SRX758351 |
stem | 49,148,806 | 100,100 | 4,914,880,600 | 42,382,932 | 35,029,638 | 19,317 | SRX758357 | |
leaf | 63,531,810 | 100,100 | 6,353,181,000 | 54,699,654 | 45,625,544 | 19,328 | SRX758363 | |
3Â day | root | 54,362,660 | 100,100 | 5,436,266,000 | 45,401,558 | 37,587,578 | 21,180 | SRX758352 |
stem | 48,114,866 | 100,100 | 4,811,486,600 | 41,208,427 | 33,669,930 | 19,900 | SRX758358 | |
leaf | 55,411,400 | 100,100 | 5,541,140,000 | 47,776,074 | 39,877,716 | 20,088 | SRX758364 | |
5Â day | root | 55,644,310 | 100,100 | 5,564,431,000 | 46,703,315 | 38,601,890 | 20,389 | SRX758353 |
stem | 60,981,712 | 100,100 | 6,098,171,200 | 52,263,645 | 43,831,390 | 21,019 | SRX758359 | |
leaf | 54,073,298 | 100,100 | 5,407,329,800 | 45,762,381 | 37,334,730 | 19,633 | SRX758365 | |
7Â day | root | 49,978,570 | 100,100 | 4,997,857,000 | 41,697,612 | 34,220,122 | 20,354 | SRX758354 |
stem | 52,655,072 | 100,100 | 5,265,507,200 | 45,398,187 | 37,654,496 | 18,971 | SRX758360 | |
leaf | 56,194,980 | 100,100 | 5,619,498,000 | 48,170,802 | 40,207,756 | 18,385 | SRX758366 | |
9Â day | root | 55,412,038 | 100,100 | 5,541,203,800 | 46,873,595 | 38,947,342 | 19,271 | SRX758355 |
stem | 53,283,108 | 100,100 | 5,328,310,800 | 46,033,892 | 37,871,864 | 17,644 | SRX758361 | |
leaf | 54,119,488 | 100,100 | 5,411,948,800 | 46,471,434 | 38,712,836 | 18,776 | SRX758367 |