Skip to main content

Table 1 List of 51 HbAQP genes identified in this study

From: Genome-wide identification of rubber tree (Hevea brasiliensis Muell. Arg.) aquaporin genes and their response to ethephon stimulation in the laticifer, a rubber-producing tissue

 

Name

Nucleotide length (bp, from start to stop codons)

Intron NO.

EST hits in GenBank

Shoot apexa

Leafb

laticiferc

Barkd

Roote

Somatic embryogenesisf

Cloning strategy

Phytozome ID of AtAQP ortholog

Phytozome ID of PtAQP ortholog

Gene

CDS

PIP

HbPIP1;1

1161

864

3

10

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT4G00430

Pt_0010s19930

HbPIP1;2

1155

864

3

6

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT4G00430

Pt_0010s19930

HbPIP1;3

2952

864

3

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT4G00430

Pt_0003s12870

HbPIP1;4

2285

864

3

4

Yes

Yes

Yes

Yes

Yes

Yes

RACE

AT4G00430

Pt_0003s12870

HbPIP1;5

1370

810

3

2

Yes

 

Yes

Yes

Yes

 

RT-PCR

AT4G00430

Pt_0016s12070

HbPIP2; 1

1150

867

3

4

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT3G53420

Pt_0006s12980

HbPIP2;2

1174

867

3

2

Yes

Yes

 

Yes

Yes

Yes

 

AT3G53420

Pt_0006s12980

HbPIP2;3

1801

861

3

2

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT3G53420

Pt_0006s12980

HbPIP2;4

1590

861

3

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT3G53420

Pt_0006s12980

HbPIP2;5

1673

858

3

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT3G53420

Pt_0010s22950

HbPIP2;6

2927

861

3

0

Yes

Yes

 

Yes

Yes

Yes

 

AT3G53420

Pt_0010s22950

HbPIP2; 7

1263

837

3

15

Yes

Yes

Yes

Yes

Yes

Yes

RACE

AT3G53420

Pt_0004s18240

HbPIP2;8

1263

843

3

1

Yes

Yes

 

Yes

Yes

  

AT3G53420

Pt_0004s18240

HbPP2;9

1120

843

3

0

Yes

Yes

 

Yes

Yes

Yes

 

AT3G53420

Pt_0004s18240

HbPIP2; 1

1401

858

3

0

    

Yes

  

AT3G53420

Pt_0005s11110

TIP

HbTIP1;1

853

759

1

1

Yes

Yes

 

Yes

Yes

Yes

RT-PCR

AT2G36830

Pt_0006s12350

HbTIP1;2

851

759

1

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT2G36830

Pt_0006s12350

HbTP1;3

848

762

1

0

Yes

Yes

  

Yes

  

AT2G36830

Pt_0009s01070

HbTIP1;4

820

684

1

0

       

AT2G36830

Pt_0009s01070

HbTP1;5

931

759

2

2

Yes

Yes

 

Yes

Yes

Yes

 

AT4G01470

Pt_0008s05050

HbTIP1;6

974

759

2

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT4G01470

Pt_0008s05050

HbTIP1;7

1189

759

2

0

Yes

   

Yes

Yes

 

AT4G01470

Pt_0001s24200

HbTIP1;8

997

759

2

0

Yes

Yes

 

Yes

Yes

Yes

 

AT4G01470

Pt_0001s24200

HbTP2;1

1574

747

2

0

Yes

Yes

 

Yes

Yes

Yes

 

AT3G16240

Pt_0001s18730

HbTIP2;2

1165

747

2

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT3G16240

Pt_0001s18730

HbTIP2;3

1010

753

2

0

Yes

   

Yes

Yes

 

AT4G17340

Pt_0003s07550

HbTIP2;4

1009

753

2

0

    

Yes

  

AT4G17340

Pt_0003s07550

HbTIP3;1

967

774

2

0

Yes

   

Yes

Yes

 

AT1G17810

Pt_0017s03540

HbTIP3;2

915

742

2

0

    

Yes

  

AT1G17810

Pt_0017s03540

HbTIP4;1

1010

756

2

0

Yes

Yes

 

Yes

Yes

Yes

 

AT2G25810

Pt_0006s25620

HbTIP5;1

1181

759

2

0

    

Yes

Yes

 

AT3G47440

Pt_0001s00690

HbTIP5;2

1119

744

2

0

       

AT3G47440

Pt_0001s00690

NIP

HbNIP1;1

1582

861

4

0

  

Yes

Yes

Yes

 

RT-PCR

AT4G18910

Pt_0011s06770

HbNP1;2

1939

864

4

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT4G18910

Pt_0011s06770

HbNIP2;1

2930

858

4

0

 

Yes

 

Yes

Yes

Yes

  

Pt_0017s11960

HbNP3;1

1249

849

4

0

  

Yes

 

Yes

 

RT-PCR

 

Pt_0002s09740

HbNIP4;1

1237

804

4

0

   

Yes

   

AT5G37810

Pt_0010s12330

HbNIP4;2

1268

846

4

0

   

Yes

   

AT5G37820

Pt_0017s03060

HbNIP5;1

1932

897

3

0

Yes

Yes

 

Yes

Yes

Yes

 

AT4G10380

Pt_0001s45920

HbNIP6;1

3371

927

4

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT1G80760

Pt_0001s14850

HbNIP7;1

1359

897

4

0

       

AT3G06100

Pt_0008s20750

XIP

HbXIP1;1

973

870

1

0

        

Pt_0009s13090

HbXIP1;2

1022

891

1

0

    

Yes

   

Pt_0009s13090

HbXIP1;3

959

831

1

0

        

Pt_0009s13090

HbXIP1;4

959

831

1

0

        

Pt_0009s13090

HbXIP2;1

1163

918

2

0

Yes

Yes

 

Yes

Yes

Yes

RT-PCR

 

Pt_0009s13110

HbXIP3; 1

771

771

0

0

        

Pt_0009s13070

SIP

HbSIP1;1

720

720

0

0

Yes

Yes

 

Yes

Yes

  

AT3G04090

Pt_0014s15250

HbSIP1;2

4572

720

2

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT3G04090

Pt_0019s04640

HbSP1;3

5438

720

2

0

Yes

Yes

 

Yes

Yes

Yes

 

AT3G04090

Pt_0019s04640

HbSIP2;1

13833

723

2

0

Yes

Yes

Yes

Yes

Yes

Yes

RT-PCR

AT3G56950

Pt_0016s02560

  1. aBased on the 454 transcriptome data under the NCBI SRA accession number of DRX000223; b Based on the 454 transcriptome data of SRX451708 and Illumina transcriptome data of SRX206128, SRX206129, SRX206130, SRX203083, SRX203085, SRX203117, SRX203118 and SRX278515; c Based on the 454 transcriptome data of SRX451705 and Illumina transcriptome data of SRX037405, SRX206131, SRX206132 and SRX278514; d Based on the 454 transcriptome data of SRX451707 and Illumina transcriptome data of SRX278513; e Based on the 454 transcriptome data of SRX451710; f Based on the 454 transcriptome data of SRX451709. Read-mapping was carried out using Bowtie2 with default parameters, and mapped read number of more than one was counted as “Yes” representing detected genes
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us