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Table 1 List of 51 HbAQP genes identified in this study

From: Genome-wide identification of rubber tree (Hevea brasiliensis Muell. Arg.) aquaporin genes and their response to ethephon stimulation in the laticifer, a rubber-producing tissue

  Name Nucleotide length (bp, from start to stop codons) Intron NO. EST hits in GenBank Shoot apexa Leafb laticiferc Barkd Roote Somatic embryogenesisf Cloning strategy Phytozome ID of AtAQP ortholog Phytozome ID of PtAQP ortholog
Gene CDS
PIP HbPIP1;1 1161 864 3 10 Yes Yes Yes Yes Yes Yes RT-PCR AT4G00430 Pt_0010s19930
HbPIP1;2 1155 864 3 6 Yes Yes Yes Yes Yes Yes RT-PCR AT4G00430 Pt_0010s19930
HbPIP1;3 2952 864 3 0 Yes Yes Yes Yes Yes Yes RT-PCR AT4G00430 Pt_0003s12870
HbPIP1;4 2285 864 3 4 Yes Yes Yes Yes Yes Yes RACE AT4G00430 Pt_0003s12870
HbPIP1;5 1370 810 3 2 Yes   Yes Yes Yes   RT-PCR AT4G00430 Pt_0016s12070
HbPIP2; 1 1150 867 3 4 Yes Yes Yes Yes Yes Yes RT-PCR AT3G53420 Pt_0006s12980
HbPIP2;2 1174 867 3 2 Yes Yes   Yes Yes Yes   AT3G53420 Pt_0006s12980
HbPIP2;3 1801 861 3 2 Yes Yes Yes Yes Yes Yes RT-PCR AT3G53420 Pt_0006s12980
HbPIP2;4 1590 861 3 0 Yes Yes Yes Yes Yes Yes RT-PCR AT3G53420 Pt_0006s12980
HbPIP2;5 1673 858 3 0 Yes Yes Yes Yes Yes Yes RT-PCR AT3G53420 Pt_0010s22950
HbPIP2;6 2927 861 3 0 Yes Yes   Yes Yes Yes   AT3G53420 Pt_0010s22950
HbPIP2; 7 1263 837 3 15 Yes Yes Yes Yes Yes Yes RACE AT3G53420 Pt_0004s18240
HbPIP2;8 1263 843 3 1 Yes Yes   Yes Yes    AT3G53420 Pt_0004s18240
HbPP2;9 1120 843 3 0 Yes Yes   Yes Yes Yes   AT3G53420 Pt_0004s18240
HbPIP2; 1 1401 858 3 0      Yes    AT3G53420 Pt_0005s11110
TIP HbTIP1;1 853 759 1 1 Yes Yes   Yes Yes Yes RT-PCR AT2G36830 Pt_0006s12350
HbTIP1;2 851 759 1 0 Yes Yes Yes Yes Yes Yes RT-PCR AT2G36830 Pt_0006s12350
HbTP1;3 848 762 1 0 Yes Yes    Yes    AT2G36830 Pt_0009s01070
HbTIP1;4 820 684 1 0         AT2G36830 Pt_0009s01070
HbTP1;5 931 759 2 2 Yes Yes   Yes Yes Yes   AT4G01470 Pt_0008s05050
HbTIP1;6 974 759 2 0 Yes Yes Yes Yes Yes Yes RT-PCR AT4G01470 Pt_0008s05050
HbTIP1;7 1189 759 2 0 Yes     Yes Yes   AT4G01470 Pt_0001s24200
HbTIP1;8 997 759 2 0 Yes Yes   Yes Yes Yes   AT4G01470 Pt_0001s24200
HbTP2;1 1574 747 2 0 Yes Yes   Yes Yes Yes   AT3G16240 Pt_0001s18730
HbTIP2;2 1165 747 2 0 Yes Yes Yes Yes Yes Yes RT-PCR AT3G16240 Pt_0001s18730
HbTIP2;3 1010 753 2 0 Yes     Yes Yes   AT4G17340 Pt_0003s07550
HbTIP2;4 1009 753 2 0      Yes    AT4G17340 Pt_0003s07550
HbTIP3;1 967 774 2 0 Yes     Yes Yes   AT1G17810 Pt_0017s03540
HbTIP3;2 915 742 2 0      Yes    AT1G17810 Pt_0017s03540
HbTIP4;1 1010 756 2 0 Yes Yes   Yes Yes Yes   AT2G25810 Pt_0006s25620
HbTIP5;1 1181 759 2 0      Yes Yes   AT3G47440 Pt_0001s00690
HbTIP5;2 1119 744 2 0         AT3G47440 Pt_0001s00690
NIP HbNIP1;1 1582 861 4 0    Yes Yes Yes   RT-PCR AT4G18910 Pt_0011s06770
HbNP1;2 1939 864 4 0 Yes Yes Yes Yes Yes Yes RT-PCR AT4G18910 Pt_0011s06770
HbNIP2;1 2930 858 4 0   Yes   Yes Yes Yes    Pt_0017s11960
HbNP3;1 1249 849 4 0    Yes   Yes   RT-PCR   Pt_0002s09740
HbNIP4;1 1237 804 4 0     Yes     AT5G37810 Pt_0010s12330
HbNIP4;2 1268 846 4 0     Yes     AT5G37820 Pt_0017s03060
HbNIP5;1 1932 897 3 0 Yes Yes   Yes Yes Yes   AT4G10380 Pt_0001s45920
HbNIP6;1 3371 927 4 0 Yes Yes Yes Yes Yes Yes RT-PCR AT1G80760 Pt_0001s14850
HbNIP7;1 1359 897 4 0         AT3G06100 Pt_0008s20750
XIP HbXIP1;1 973 870 1 0          Pt_0009s13090
HbXIP1;2 1022 891 1 0      Yes     Pt_0009s13090
HbXIP1;3 959 831 1 0          Pt_0009s13090
HbXIP1;4 959 831 1 0          Pt_0009s13090
HbXIP2;1 1163 918 2 0 Yes Yes   Yes Yes Yes RT-PCR   Pt_0009s13110
HbXIP3; 1 771 771 0 0          Pt_0009s13070
SIP HbSIP1;1 720 720 0 0 Yes Yes   Yes Yes    AT3G04090 Pt_0014s15250
HbSIP1;2 4572 720 2 0 Yes Yes Yes Yes Yes Yes RT-PCR AT3G04090 Pt_0019s04640
HbSP1;3 5438 720 2 0 Yes Yes   Yes Yes Yes   AT3G04090 Pt_0019s04640
HbSIP2;1 13833 723 2 0 Yes Yes Yes Yes Yes Yes RT-PCR AT3G56950 Pt_0016s02560
  1. aBased on the 454 transcriptome data under the NCBI SRA accession number of DRX000223; b Based on the 454 transcriptome data of SRX451708 and Illumina transcriptome data of SRX206128, SRX206129, SRX206130, SRX203083, SRX203085, SRX203117, SRX203118 and SRX278515; c Based on the 454 transcriptome data of SRX451705 and Illumina transcriptome data of SRX037405, SRX206131, SRX206132 and SRX278514; d Based on the 454 transcriptome data of SRX451707 and Illumina transcriptome data of SRX278513; e Based on the 454 transcriptome data of SRX451710; f Based on the 454 transcriptome data of SRX451709. Read-mapping was carried out using Bowtie2 with default parameters, and mapped read number of more than one was counted as “Yes” representing detected genes
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