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Table 2 Comparison of the CCE gene number in T. urticae, P. ulmi, P. citri and D. melanogaster

From: Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Class/Clade T. urticae P. ulmi a P. citri a D. melanogaster
Dietary class (Clade A, B, C)     13
Hormone/semiochemical class     
 D     3
 E     2
 F     3
 G     
 F’ 2 2 2 (4)  
Neuro/developmental class     
 H     5
 I 2 1 1 1
 J 1 1 1 1
 K 1 1 1 1
 L 5 4 (13) 1 (20) 4
 M 1 1 0 (4) 2
 J’ 34 10 (17) 10 (23)  
 J” 22 16 (18) 17 (25)  
Undetermined clades (NC) 3 5 (7) 7 (12)  
Total 71 41 (61) 40 (91) 35
  1. anumbers without brackets represent the number of Panonychus CCEs that were included in phylogenetic analysis (Fig. 3) while number within brackets represent the total number of non-allelic CCE ORFs found in Panonychus species (see Methods)