Genomic dissection and prediction of heading date in perennial ryegrass

BMC Genomics

Table 1 Summary statistics for all the significant SNPs

Scaffold\|Position	Location	MAF	α	% σ² _g(F₂)	% σ² _g(SYN)	P-value Bonferroni	P-value FDR
3546\|38401	outside gene	0.08	1.19	1.62	0.65	6E-09	6E-09
18961\|1999	exon	0.12	1.00	1.70	0.74	3E–08	1E–08
18961\|3412	exon	0.27	0.57	1.01	0.71	0.004	4E–04
6570\|54193	outside gene	0.11	1.03	1.68	1.02	6E–07	9E–08
22974\|3466	outside gene	0.06	1.39	1.82	1.06	1E–06	2E–07
22974\|2499	outside gene	0.22	0.74	1.47	0.86	2E–05	3E–06
1379\|64623	outside gene	0.09	0.84	0.92	0.33	0.002	2E–04
1379\|60655	exon	0.23	0.56	0.87	0.53	0.147	0.009
18588\|6786	intron	0.06	1.14	1.19	0.37	0.002	2E–04
18588\|6657	exon	0.28	0.50	0.79	0.52	0.417	0.020
18588\|6882	exon	0.06	1.01	0.98	0.45	0.696	0.027
9291\|22927	outside gene	0.18	0.59	0.80	0.46	0.007	6E–04
9679\|461	outside gene	0.20	0.59	0.88	0.41	0.010	7E–04
2801\|42855	exon	0.33	0.51	0.91	0.56	0.355	0.018
5059\|6359	exon	0.25	0.51	0.77	0.53	0.457	0.021
3169\|35325	exon	0.06	1.05	0.90	0.75	0.503	0.022
21110\|2619	outside gene	0.17	0.52	0.59	0.28	0.597	0.025
3586\|39964	exon	0.43	0.40	0.61	0.43	0.730	0.027
3395\|30371	outside gene	0.39	0.47	0.82	0.54	0.837	0.030

ISSN: 1471-2164