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Table 4 Differentially expressed genes between patBFMI and matBFMI on X chromosome and mitochondria

From: The direction of cross affects obesity after puberty in male but not female offspring

Gene Symbol1

Chr

Gene Description (mgi)

Mean RPKM2

Fch matBFMI/

patBFMI

tTest F1

TFBS3

patBFMI

matBFMI

Trmt2b

X

TRM2 tRNA methyltransferase 2B

2.07

1.83

0.88

0.0008

-

Ssr4

X

signal sequence receptor, delta

3.01

2.84

0.94

0.0013

-

Rps4x

X

ribosomal protein S4, X-linked

4.3

4.17

0.97

0.0026

-

Prdx4

X

peroxiredoxin 4

3.63

3.49

0.96

0.0086

-

Shroom2

X

shroom family member 2

1.66

1.46

0.88

0.0163

-

Rps24-ps3

X

ribosomal protein S24, pseudogene 3

5.17

5.04

0.97

0.0212

-

Gm5763

X

predicted pseudogene 5763

0.85

1.52

1.79

0.0255

-

Nsdhl

X

NAD(P) dependent steroid dehydrogenase-like

3.15

3.47

1.10

0.0331

-

Abcd1

X

ATP-binding cassette, sub-family D (ALD), 1

1.37

1.67

1.22

0.0439

-

Mospd2

X

motile sperm domain containing 2

1.92

1.88

0.98

0.0456

-

Haus7

X

HAUS augmin-like complex, subunit 7

1.85

2.23

1.21

0.0486

Esrrb

Cd99l2

X

CD99 antigen-like 2

1.77

1.87

1.06

0.0489

Esrra,Esrrb

Serpina7

X

serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7

2.01

2.52

1.25

0.0508

ERE

Pls3

X

plastin 3 (T-isoform)

2.84

2.74

0.96

0.0557

-

Tsc22d3

X

TSC22 domain family, member 3

3.59

3.20

0.89

0.0667

ADR3

Slc16a2

X

solute carrier family 16 (monocarboxylic acid transporters), member 2

2.77

2.62

0.95

0.0668

-

Ar

X

androgen receptor

0.26

0.62

2.38

0.0678

-

Hsd17b10

X

hydroxysteroid (17-beta) dehydrogenase 10

4.21

4.43

1.05

0.0688

-

Tmsb4x

X

thymosin, beta 4, X chromosome

3.8

3.63

0.96

0.0703

IR3

Gyk

X

glycerol kinase

2.9

2.97

1.02

0.0790

Esrra,Esrra, ERE

Gm14760

X

predicted gene 14760

3.02

3.18

1.05

0.0803

Esrra,Esrrb

Wdr13

X

WD repeat domain 13

1.62

1.7

1.05

0.0831

Esrra, ERE

Gm14373

X

predicted gene 14373

2.49

2.41

0.97

0.0858

-

Cldn2

X

claudin 2

3.22

3.45

1.07

0.0870

-

Rlim

X

ring finger protein, LIM domain interacting

2.2

2.12

0.96

0.0910

-

Zfx

X

zinc finger protein X-linked

1.47

1.23

0.84

0.0915

-

Pqbp1

X

polyglutamine binding protein 1

2.53

2.70

1.07

0.0971

-

Lamp2

X

lysosomal-associated membrane protein 2

4.14

4.01

0.97

0.0974

Esrra,Esrrb

F8

X

coagulation factor VIII

1.99

1.83

0.92

0.0979

-

Gm6472

X

predicted pseudogene 6472

4.99

4.90

0.98

0.0997

-

mt-Nd1

MT

mitochondrially encoded NADH dehydrogenase 1

6.76

6.42

0.95

0.0165

-

  1. 1Bold gene symbols indicate up-regulation in matBFMI. Y chromosomal genes were not differentially expressed. Chr – chromosome, matBFMI – BFMI mother, patBFMI – BFMI father, Fch – fold-change
  2. 2All values were log-transformed (ln)
  3. 3TFBS - Transcription factor binding sites for steroid hormones. Esrrb – estrogen related receptor b, ERE – estrogen response element, ADR3 – androgen direct repeats of the hexameric half-site, IR3 – androgen inverted repeats of hexameric half-site separated by 3 bp of spacer
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BMC Genomics

ISSN: 1471-2164

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