Extensive variation between tissues in allele specific expression in an outbred mammal

BMC Genomics

Table 6 Genes found to be imprinted in this dataset, along with gene identifiers, which species and which allele was previously reported, the number of SNP used to test for imprinting, the number of tissues the SNP were expressed in, the number of tissues where the SNP showed imprinting or partial imprinting, the imprinting status and expressed allele in this dataset. The expressed allele was determined from the SNP tested or where they were not informative from other SNP within the gene but not within exons or from SNP flanking the gene

Bovine ensembl ID	Gene name	Expressed allele reported	Species reported	#SNP	#Tissues expressed	#Tissues imprinted	#Tissues partially imprinted	Imprinting status	Expressed allele
ENSBTAG00000010128	NAP1L5	Paternal	human, mouse, cattle	3	13	13	0	I
ENSBTAG00000018645	DLX5	Maternal	human	1	1	1	0	I	Paternal
ENSBTAG00000039080	SLC22A3	Maternal	human, mouse	1	5	5	0	I	Maternal
ENSBTAG00000046585	RTL1	Paternal	human, mouse, cattle	3	1	1	0	I	Paternal
ENSBTAG00000047473	NLRP2	Maternal	human	8	1	0	1	PI	Paternal
ENSBTAG00000002402	Igf2r	Maternal	mouse, cattle	2	14	4	1	TSI	Maternal
ENSBTAG00000008361	Pon2	Maternal	mouse	3	14	0	1	TSPI	Paternal^a
ENSBTAG00000013066	Igf2	Paternal	mouse, cattle	1	13	12	0	TSI	Paternal
ENSBTAG00000017245	COPG2IT1	Paternal/Maternal	human, mouse	1	14	1	0	TSI	Paternal^a
ENSBTAG00000024426	PPP1R9A	Maternal	human, mouse	2	9	2	0	TSI	Paternal
ENSBTAG00000027081	ATP10A	Maternal	human, mouse	13	9	0	4	TSPI	Paternal^a
ENSBTAG00000034645	Pon3	Maternal	mouse	1	13	5	0	TSI	Paternal^b
ENSBTAG00000002813	Gab1	Paternal	mouse	2	18	0	1	TSPI
ENSBTAG00000003035	Impact	Paternal	mouse	18	18	0	17	TSPI	Paternal
ENSBTAG00000006640	RB1	Maternal	human	4	18	0	4	TSPI	Paternal^ab
ENSBTAG00000015821	Ampd3	Maternal	mouse	6	12	0	3	TSPI	Tissue Specific^c
ENSBTAG00000017086	GRB10	Isoform dependant	human/mouse	8	16	0	11	TSPI	Paternal

^aBased on SNP within gene boundaries but not within exon
^bBased on SNP upstream of gene
^cBased on SNP up and downstream of gene. Lung maternal, thyroid and lymph node paternal
Imprinting status is defined as: I Imprinted, PI Partially imprinted, TSI Tissue specifically imprinted, TSPI Tissue specific partially imprinted

ISSN: 1471-2164