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Table 6 Genes found to be imprinted in this dataset, along with gene identifiers, which species and which allele was previously reported, the number of SNP used to test for imprinting, the number of tissues the SNP were expressed in, the number of tissues where the SNP showed imprinting or partial imprinting, the imprinting status and expressed allele in this dataset. The expressed allele was determined from the SNP tested or where they were not informative from other SNP within the gene but not within exons or from SNP flanking the gene

From: Extensive variation between tissues in allele specific expression in an outbred mammal

Bovine ensembl ID Gene name Expressed allele reported Species reported #SNP #Tissues expressed #Tissues imprinted #Tissues partially imprinted Imprinting status Expressed allele
ENSBTAG00000010128 NAP1L5 Paternal human, mouse, cattle 3 13 13 0 I  
ENSBTAG00000018645 DLX5 Maternal human 1 1 1 0 I Paternal
ENSBTAG00000039080 SLC22A3 Maternal human, mouse 1 5 5 0 I Maternal
ENSBTAG00000046585 RTL1 Paternal human, mouse, cattle 3 1 1 0 I Paternal
ENSBTAG00000047473 NLRP2 Maternal human 8 1 0 1 PI Paternal
ENSBTAG00000002402 Igf2r Maternal mouse, cattle 2 14 4 1 TSI Maternal
ENSBTAG00000008361 Pon2 Maternal mouse 3 14 0 1 TSPI Paternala
ENSBTAG00000013066 Igf2 Paternal mouse, cattle 1 13 12 0 TSI Paternal
ENSBTAG00000017245 COPG2IT1 Paternal/Maternal human, mouse 1 14 1 0 TSI Paternala
ENSBTAG00000024426 PPP1R9A Maternal human, mouse 2 9 2 0 TSI Paternal
ENSBTAG00000027081 ATP10A Maternal human, mouse 13 9 0 4 TSPI Paternala
ENSBTAG00000034645 Pon3 Maternal mouse 1 13 5 0 TSI Paternalb
ENSBTAG00000002813 Gab1 Paternal mouse 2 18 0 1 TSPI  
ENSBTAG00000003035 Impact Paternal mouse 18 18 0 17 TSPI Paternal
ENSBTAG00000006640 RB1 Maternal human 4 18 0 4 TSPI Paternalab
ENSBTAG00000015821 Ampd3 Maternal mouse 6 12 0 3 TSPI Tissue Specificc
ENSBTAG00000017086 GRB10 Isoform dependant human/mouse 8 16 0 11 TSPI Paternal
  1. aBased on SNP within gene boundaries but not within exon
  2. bBased on SNP upstream of gene
  3. cBased on SNP up and downstream of gene. Lung maternal, thyroid and lymph node paternal
  4. Imprinting status is defined as: I Imprinted, PI Partially imprinted, TSI Tissue specifically imprinted, TSPI Tissue specific partially imprinted
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