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Table 1 Enhancer binding proteins of D. vulgaris Hildenborough

From: σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough

Regulator Type GAFTGA motif Target operons Function Regulon reference
DVU0110 TCS response regulator GAFTGA DVU0132-DVU0133, DVU1152 Exopolysaccharide and biofilm synthesis,transmembrane transport Rajeev et al., 2011 [13], this study
DVU0118 TCS response regulator GAFTGA DVU0123-DVU0121 Transmembrane transport Rajeev et al., 2011 [13]
DVU0151 Single-component regulator GAFSEA DVU0150-DVU0146 Transmembrane transport This study
DVU0539 TCS response regulator GAFTGA DVU0542-DVU0545, DVU0943-DVU0946, DVU2133-DVU2132, DVU3025-DVU3033 Lactate metabolism, transmembrane transport Rajeev et al., 2011 [13]
DVU0569 Single-component regulator GAFTGG DVU0571 Amino acid metabolism This study
DVU0619 TCS response regulator GAFTGA DVU0617-DVU0616   This study
DVU0621 TCS response regulator GAFTGA DVU0624-DVU0625, DVU3025-DVU3033 Nitrite stress response, lactate metabolism Rajeev et al., 2011 [13], this study
DVU0653 TCS response regulator GAFTGA ncRNA downstream of DVU0653 Posttranscriptional regulation Rajeev et al., 2011 [13], this study
DVU0679 TCS response regulator GAYTGS ncRNA downstream of DVU0679 Posttranscriptional regulation Rajeev et al., 2011 [13]
DVU0744 TCS response regulator GAFTGA DVU0682 Transcriptional regulation Rajeev et al., 2011 [13], this study
DVU0804 TCS response regulator GAFTGA DVU0805-DVU0806 Posttranscriptional regulation Rajeev et al., 2011 [13], this study
DVU0946 TCS response regulator GAFTGA DVU0542-DVU0545, DVU0943-DVU0946, DVU2133-DVU2132 Lactate metabolism, transmembrane transport Rajeev et al., 2011 [13]
DVU1063 TCS response regulator GAFTGA DVU0307, DVU0316-DVU0310, DVU0318, DVU0320, DVU0863-DVU0862, DVU1032, DVU1441, DVU1444, DVU1445-DVU1443, DVU1805, DVU1880, DVU2090 Flagella Rajeev et al., 2011 [13], this study
DVU1156 TCS response regulator GAFTGA DVU1164 Amide metabolism Rajeev et al., 2011 [13], this study
DVU1419 TCS response regulator GAFTGA DVU0036, DVU1418-DVU1419, ncRNA upstream of DVU3282 Envelope stress response, posttranscriptional regulation Rajeev et al., 2011 [13]
DVU1949 Single-component regulator GAFTGA DVU1231-DVU1233, DVU1258, DVU3392*, DVU1952-DVU1949*, DVU0671*, DVU3290-DVU3292*, DVU2343-DVU2340*, DVU1823-DVU1821*, DVU0753-DVU0751* Nitrogen metabolism and transport This study
DVU2106 Single-component regulator GAFTDA DVU2105-DVU2103, DVU2107-DVU2109 Cell division Fievet et al., 2011
DVU2114 TCS response regulator GAFTGA DVU3342-DVU3344, DORF39640-DVU2129 Pili Rajeev et al., 2011 [13]
DVU2275 Single-component regulator GAYTDA DVU2272-DVU2269 Pyruvate metabolism and transport This study
DVU2359 Single-component regulator GAFTGA ncRNA upstream of DVU2357 Posttranscriptional regulation This study
DVU2394 TCS response regulator GSFTGA DVU2405-DVU2399 Energy metabolism Rajeev et al., 2011 [13]
DVU2827 Single-component regulator GAFSGA DVU2820, DVU2822-DVU2825 Pyruvate metabolism and transport This study
DVU2894 Single-component regulator GAFTHA DVU0047-DVU0043, DVU0410-DVU0409, DVU2894* Flagella This study
DVU2934 TCS response regulator GAFTGA DVU2917 Lipid A biosynthesis Rajeev et al., 2011 [13]
DVU2956 Single-component regulator GAFTGA DVU2957-DVU2964 Transmembrane transport This study
DVU2960 Single-component regulator GAFPGA    
DVU2989 Single-component regulator GAFTGA DVU2988-DVU2986 Phage shock response This study
DVU3023 TCS response regulator GAFTGA DVU2451, DVU3025-DVU3033, DVU3284* Lactate metabolism and transport Rajeev et al., 2011 [13]
DVU3142 Single-component regulator GAFTGA DVU3143-DVU3145 Energy metabolism This study
DVU3220 TCS response regulator GSFTGA DVU1231-DVU1233 Nitrogen metabolism and transport Rajeev et al., 2011 [13]
DVU3305 TCS response regulator GAFSGA DVU3302-DVU3298, DVU3303-DVU3305* General stress response, transmembrane transport Rajeev et al., 2011 [13]
DVU3334 TCS response regulator GAFTGA DVU3339.1-DVU3337 Potassium uptake Rajeev et al., 2011 [13]
DVU3381 TCS response regulator GAFTGA DVU3382-DVU3381, DVU3384 Envelope stress response Rajeev et al., 2011 [13]
DVUA0024 TCS response regulator (pseudogene) GAFTGA    
DVUA0057 TCS response regulator GAFTGA DVU0132-DVU0133, DVU1152, DVUA0030, DVUA0032-DVUA0031, DVUA0089, DVUA0036-DVUA0041 Exopolysaccharide and biofilm synthesis Rajeev et al., 2011 [13], this study
DVUA0100 Single-component regulator GVATGV DVU4010, DVUA0106-DVUA0099, DVUA203-DVUA0125 Type III secretion This study
DVUA0143 Single-component regulator GAFTGA DVUA0015-DVUA0007, DVUA0016 Nitrogen metabolism This study
  1. Operons that do not have σ54-dependent promoters are marked with asterisk