Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

BMC Genomics

Table 1 Origin of Xanthomonas campestris strains and genome properties

Strain	Pathovar^b	Isolation^b		Nb of reads^c	Contigs						Pseudochromosome
Strain	Pathovar^b	Host plant	Country and year	Nb of reads^c	Assembly size (bp)	Coverage	Nb contigs^d	N50	Average size (bp)	Largest (bp)	Nb contigs organised	Size (bp)^e	GC %
CFBP 5825R	NP^a	Barbarea vulgaris	USA, 1939	PE = 10,697,622	5,053,608	696	8	2,773,827	631,701	2,773,827	7	5,053,372	65.1
CFBP 5825R	NP^a	Barbarea vulgaris	USA, 1939	MP = 13,325,195	5,053,608	696	8	2,773,827	631,701	2,773,827	7	5,053,372	65.1
CFBP 1606R	incanae	Matthiola incana	France, 1974	PE = 19,497,157	4,966,388	1057	9	3,800,062	551,820	3,800,062	9	4,967,188	65.2
CFBP 1606R	incanae	Matthiola incana	France, 1974	MP = 12,873,343	4,966,388	1057	9	3,800,062	551,820	3,800,062	9	4,967,188	65.2
CFBP 2527R	incanae	Matthiola incana	USA, 1950	PE = 18,139,985	4,925,175	1142	6	2,485,103	820,862	2,485,103	6	4,925,675	65.1
CFBP 2527R	incanae	Matthiola incana	USA, 1950	MP = 19,259,657	4,925,175	1142	6	2,485,103	820,862	2,485,103	6	4,925,675	65.1
CFBP 5828R	raphani	Raphanus sativus	USA, nd	PE = 19,555,502	4,911,085	1029	11	1,210,840	446,462	1,728,667	10	4,911,500	65.4
CFBP 5828R	raphani	Raphanus sativus	USA, nd	MP = 10,836,933	4,911,085	1029	11	1,210,840	446,462	1,728,667	10	4,911,500	65.4

ISSN: 1471-2164