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Table 3 Selection of genes or gene clusters putatively encoding bioactive metabolites by Lysobacter species. The geneID numbers are indicated and for a gene cluster the first gene and the last gene of the cluster is indicated separated by a hyphen

From: Comparative genomics and metabolic profiling of the genus Lysobacter

  

L. ant ATCC29479

L. ant 76

L. cap 55

L. gum 3.2.11

L. enz C3

Exoenzymes

     

Chitinases

     
 

chiA

LA29479_0768

LA76x_1507

LC55x_1254

LG3211_1156

LEC3_1126

 

LA29479_4426

LA76x_0490

LC55x_4660

LG3211_1152

 

Glucanase

     
 

gluA

-

-

LC55x_4859

LG3211_2492

LEC3_2518

 

gluB

LA29479_937

LA76x_3779

LC55x_3780

LG3211_1435

LEC3_1403

 

gluC

-

-

LC55x_1557

-

LEC3_0490

Endopeptidase

     
 

alpA

LA29479_4711

L76x_3467

LC55x_3409

LG3211_1771

LEC3_1730

 

alpB

-

-

LC55x_3406

-

-

Antibiotics

     

HSAF/dihydromaltophilin

-

 

LC55x_2005

LG3211_3209

LEC3_3211-3221

lysobactin

-

-

-

LG3211_2475-76

-

WAP-8294A2

-

-

LC55x_2722-23

-

LEC3_3675-76

phenazine

LA29479_2362-68

LA76x_3329-34

-

-

-

Number of genes encoding other putative antimicrobial compounds

   

# bacteriocins

2

4

5

2

2

# lantipeptides

2

2

4

2

5

# terpene

-

-

-

1

-

# siderophore

-

-

-

1

-

# other

1

1

-

1

-

# unknown NRPS clusters

6

7

3

3

9

  1. Note: L. antibioticus strains contain only a partial gene cluster encoding phenazine
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BMC Genomics

ISSN: 1471-2164

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