Skip to main content

Table 3 Genes with the most isoform variation between brain regions

From: RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles

Ranking

Gene

Isoform ranking score

Gencode ID

RNA type

1

GATS

9.0

ENSG00000160844.6

Protein

2

NRXN3

9.0

ENSG00000021645.13

Protein

3

R3HDM1

9.0

ENSG00000048991.12

Protein

4

RTN4

9.0

ENSG00000115310.13

Protein

5

BRWD1

8.7

ENSG00000185658.9

Protein

6

MLIP

8.7

ENSG00000146147.10

Protein

7

PART1

8.7

ENSG00000152931.7

Noncoding

8

PIK3R1

8.5

ENSG00000145675.10

Protein

9

POLR1D

8.5

ENSG00000186184.11

Protein

10

PVRL3

8.3

ENSG00000177707.6

Protein

11

SEPT8

8.3

ENSG00000164402.9

Protein

12

CEP85L

8.0

ENSG00000111860.9

Protein

13

DLG2

8.0

ENSG00000150672.12

Protein

14

ELMO1

8.0

ENSG00000155849.11

Protein

15

INPP5F

8.0

ENSG00000198825.7

Protein

16

MAGI1

8.0

ENSG00000151276.18

Protein

17

SYNPO

8.0

ENSG00000171992.8

Protein

18

WDR47

8.0

ENSG00000085433.11

Protein

19

KALRN

7.8

ENSG00000160145.10

Protein

20

GAS7

7.7

ENSG00000007237.13

Protein

21

GPM6B

7.7

ENSG00000046653.10

Protein

22

ANTXR1

7.5

ENSG00000169604.15

Protein

23

ATP5S

7.5

ENSG00000125375.10

Protein

24

DGKG

7.5

ENSG00000058866.10

Protein

25

DYNC1I2

7.5

ENSG00000077380.11

Protein

26

NTRK2

7.5

ENSG00000148053.11

Protein

27

PTER

7.5

ENSG00000165983.10

Protein

28

SLC29A2

7.5

ENSG00000174669.7

Protein

29

WNK1

7.5

ENSG00000060237.12

Protein

  1. The top scoring genes are listed with variable isoform usage among brain regions. Order determined by comparing the average expression of each tissue to the average expression across all tissues and individuals. Genes with more tissue variation rank higher