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Table 4 Top 20 AEI per tissue

From: RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles

 

Amygdala

BA10

BA22

BA24

BA46

Cerebellum

Hippocampus

Insula

Post. putamen

Raphae nucleus

1

SNHG14

BCAP29

C7orf41

ATP6V1G2

SLC8A1

ERV3-1

RP11-785H5.1

CD24P4

CCT5

GSTA4

2

STON2

LMO7

ZNF91

ATP6V1G2-DDX39B

RCAN2

RP11-862 L9.3

RP11-785H5.2

TTTY14

lnc-SNURF-3

NDRG3

3

lnc-SNURF-3

NHP2L1

NHP2L1

SYNJ1

SPTBN1

CTD-2353 F22.1

DNAJA4

PILRB

SNHG14

RALGAPB

4

AFTPH

NUDT5

ZNF391

TXN2

LPHN3

NMNAT2

PDE1A

AC005592.2

PDXP

RBM26

5

UBE3A

RAB21

NGEF

PRPF8

FAM212B

GPRIN3

LANCL2

FGF1

SH3BP1

GPRIN3

6

PEG3

UBE3A

SENP2

FAM120A

PSD3

CHN1

DCP2

MAP1LC3B

SPP1

SOGA1

7

ZIM2

IL6ST

LRRC6

NHP2L1

AHSA1

SEPT3

C9orf72

POLR3F

ZEB1

NALCN

8

RP11-746 M1.1

UFM1

LPAR1

YWHAB

SERINC1

UBR3

USP47

RPL21P3

PYGB

FUT9

9

CELSR2

PDGFRA

RPS20

TAOK1

ANKS1B

GAS7

KIAA1549

CCDC103

YWHAG

RIMS2

10

AP1S1

ZEB1

ENO4

POMP

LINGO1

PLK2

NEFL

FAM187A

PBX3

NHP2L1

11

NHP2L1

NEO1

KIAA1598

RP11-269G24.3

ANK2

EPB41L1

PRRC2C

GFAP

MANBAL

NMNAT2

12

OPA1

TAF2

NECAB2

TANC2

AL391357.1

NEDD4L

STARD13

ARHGAP32

SV2B

SEPT3

13

WDFY3

AL391152.1

FAM107A

IGFBP5

DDOST

MAP2

CROCCP3

PCM1

SETD6

PPP3CA

14

MEF2A

CNGB3

CYFIP1

PPFIBP1

PINK1

YWHAG

EPHA7

PDE8B

KIF5C

USP24

15

LHFPL3

CPNE3

ARHGAP32

SPHKAP

PINK1-AS

lnc-GALNT2-1

AC010127.3

NRXN3

ECHS1

RP11-981G7.1

16

RPS6KA2

ATF6

SCP2

MYO5A

CTSB

AL691479.1

SCN1A

EIF2AK4

QKI

GAS7

17

CDC14B

NAV2-AS1

ANKS1B

GAS7

FMN2

CASC7

C1orf226

PRDM2

FAM13C

MAPK9

18

PRICKLE2

TNS3

PPP1R12B

PRKCB

DST

MBP

RP11-565P22.6

WDR41

ACIN1

RP11-463C8.4

19

RP11-129B22.1

ADNP2

SLC6A1

RP11-862 L9.3

--

NCL

AJAP1

ARCN1

FDFT1

ZNF91

20

ARHGAP32

EXOC5

APBA1

PCDH9

--

MAP1A

SRPK2

TPM1

MOCS1

APOL2

  1. After restricting the list of genes with AEI to those with >30 reads per SNP averaged across gene, the list for each region is sorted by average AEI fold-change