|  | Redundant | Non-redundant |  |  | Redundant | Non-redundant | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
 |  | Reads | Matching N. benthamiana genome | Reads | Matching N. benthamiana genome |  |  | Reads | Matching N. benthamiana genome | Reads | Matching N. benthamiana genome |
Seedling 1 | Raw reads | 4 353 615 | Â | Â | Â | Stem 1 | Raw reads | 2 673 839 | Â | Â | Â |
 | Adaptor removed | 3 192 563 |  | 1 106 502 |  |  | Adaptor removed | 2 468 386 |  | 858 314 |  |
 | Filter by sequence properties | 3 187 558 |  | 1 102 305 |  |  | Filter by sequence properties | 2 464 474 |  | 854 744 |  |
 | t/rRNA removed | 3 034 009 | 2 791 655 | 1 085 271 | 942 175 |  | t/rRNA removed | 2 404 489 | 2 205 954 | 846 701 | 746 712 |
 | Match known miRNAs | 262 998 | 259 394 | 1 531 | 792 |  | Match known miRNAs | 121 361 | 119 819 | 1 376 | 860 |
Seedling 2 | Raw reads | 13 565 620 | Â | Â | Â | Stem 2 | Raw reads | 13 390 095 | Â | Â | Â |
 | Adaptor removed | 9 931 841 |  | 1 048 202 |  |  | Adaptor removed | 12 682 160 |  | 3 280 430 |  |
 | Filter by sequence properties | 9 916 497 |  | 1 036 381 |  |  | Filter by sequence properties | 12 662 117 |  | 3 263 087 |  |
 | t/rRNA removed | 9 461 135 | 8 656 790 | 1 016 371 | 841 123 |  | t/rRNA removed | 12 195 396 | 11 213 510 | 3 246 517 | 2 773 011 |
 | Match known miRNAs | 1 132 848 | 1 117 758 | 2 423 | 1 030 |  | Match known miRNAs | 664 082 | 654 984 | 3 455 | 1 969 |
Root 1 | Raw reads | 4 416 396 | Â | Â | Â | Flower 1 | Raw reads | 17 715 434 | Â | Â | Â |
 | Adaptor removed | 3 567 326 |  | 673 485 |  |  | Adaptor removed | 15 107 462 |  | 4 920 011 |  |
 | Filter by sequence properties | 3 561 838 |  | 669 035 |  |  | Filter by sequence properties | 15 084 084 |  | 4 899 263 |  |
 | t/rRNA removed | 3 250 883 | 2 926 826 | 652 495 | 553 372 |  | t/rRNA removed | 14 374 989 | 13 270 386 | 4 872 774 | 4 186 250 |
 | Match known miRNAs | 368 908 | 363 793 | 1557 | 827 |  | Match known miRNAs | 517 965 | 510 930 | 3 461 | 2 128 |
Root 2 | Raw reads | 6 227 488 | Â | Â | Â | Flower 2 | Raw reads | 8 784 135 | Â | Â | Â |
 | Adaptor removed | 5 472 237 |  | 2 020 365 |  |  | Adaptor removed | 8 156 033 |  | 2 71814 |  |
 | Filter by sequence properties | 5 463 791 |  | 2 013 081 |  |  | Filter by sequence properties | 8 143 554 |  | 262 570 |  |
 | t/rRNA removed | 5 041 719 | 4 673 608 | 1 992 006 | 1 746 022 |  | t/rRNA removed | 7 295 596 | 6 508 891 | 253 399 | 185 299 |
 | Match known miRNAs | 308 179 | 304 276 | 2 402 | 1 474 |  | Match known miRNAs | 817 620 | 807 317 | 1 526 | 547 |
Leaf 1 | Raw reads | 4 481 051 | Â | Â | Â | Leaf BTI | Raw reads | 2 646 118 | Â | Â | Â |
 | Adaptor removed | 3 752 733 |  | 1 675 147 |  |  | Adaptor removed | 2 373 816 |  | 445 460 |  |
 | Filter by sequence properties | 3 746 943 |  | 1 670 236 |  |  | Filter by sequence properties | 2 370 062 |  | 442 372 |  |
 | t/rRNA removed | 3 567 987 | 3 252 343 | 1 644 909 | 1 440 195 |  | t/rRNA removed | 2 277 189 | 2 092 901 | 433 297 | 375 749 |
 | Match known miRNAs | 258 610 | 255 179 | 2 368 | 1 502 |  | Match known miRNAs | 234 022 | 231 082 | 1 025 | 489 |
Leaf 2 | Raw reads | 3 801 050 | Â | Â | Â | Seedling BTI | Raw reads | 7 874 296 | Â | Â | Â |
 | Adaptor removed | 2 925 945 |  | 1 149 340 |  |  | Adaptor removed | 7 174 326 |  | 2 105 046 |  |
 | Filter by sequence properties | 2 921 408 |  | 1 145 456 |  |  | Filter by sequence properties | 7 163 048 |  | 2 095 876 |  |
 | t/rRNA removed | 2 834 354 | 2 596 026 | 1 131 710 | 982 432 |  | t/rRNA removed | 6 906 776 | 6 088 762 | 2 070 845 | 287 724 |
 | Match known miRNAs | 274 028 | 270 476 | 1 434 | 737 |  | Match known miRNAs | 786 266 | 423 581 | 2205 | 113 |