Transcriptomics of diapause in an isogenic self-fertilizing vertebrate

BMC Genomics

Table 2 The percentages of transcripts that exist in various developmental stages of Kmar fish

Comparison	Transcripts detected in	WGS^b (n = 67,374)	RNA-Seq^c (n = 206,747)	RNA-Seq^d (n = 97,979)
Diapause vs. pre-Diapause	Diapause only	1.92 + 0.38 %	1.11 + 0.04 %	0.23 + 0.00 %
	pre-Diapause only	0.86 + 0.40 %	0.62 + 0.15 %	0.16 + 0.04 %
	both Diapause & pre-Diapause	96.94 + 0.16 %	98.01 + 0.14 %	99.59 + 0.04 %
	other^a	0.28 + 0.14 %	0.50 + 0.15 %	0.02 + 0.00 %
Diapause vs. post-Diapause	Diapause only	1.05 + 0.48 %	1.21 + 0.09 %	0.36 + 0.00 %
	post-Diapause only	1.03 + 0.49 %	1.01 + 0.22 %	0.17 + 0.04 %
	both Diapause & post-Diapause	97.81 + 1.02 %	97.68 + 0.18 %	99.45 + 0.04 %
	other^a	0.11 + 0.06 %	0.09 + 0.02 %	0.01 + 0.00 %

^atranscripts exist in other developmental stage, i.e. in post-diapause for diapause vs. pre-diapause, and vice versa: in pre-diapause for diapause vs. post-diapause;
^bassembly was built by ABySS;
^ctranscriptome was assembled by Trans-ABySS;
^dtranscriptome was assembled by Trinity

ISSN: 1471-2164