Table 3 Percentages of up- or down-regulated transcripts in diapause versus pre- or post-diapause
From: Transcriptomics of diapause in an isogenic self-fertilizing vertebrate
Reference | Total transcripts | No. of differentially regulated transcripts | Diapause/pre-Diapause | Diapause/post-Diapause | ||
|---|---|---|---|---|---|---|
Up-regulated | Down-regulated | Up-regulated | Down-regulated | |||
Kmar de novo Genome (ABySS) | 67,374 | 120 | 21.67Â % | 9.17Â % | 20.00Â % | 66.67Â % |
Kmar de novo Transcriptome (Trans-ABySs) | 206,747 | 198 | 10.61Â % | 11.62Â % | 11.62Â % | 78.28Â % |
Kmar de novo Transcriptome (Trinity) | 97,979 | 176 | 19.89Â % | 15.34Â % | 13.64Â % | 69.89Â % |