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Table 6 SNPs identified by strategy C using BHIT in soybean data

From: A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies

Result index

SNP index

Interaction SNPs

Codon change

Amino acid change

Mapped gene

Gene annotation

1

293

Gm08_20897627_G_A

gga- > aga

G- > R

Glyma08g26580

Enzyme: EC 6.3.2.19 Ubiquitin--protein ligase

294

Gm08_20954490_C_T

gct- > gtt

A- > V

Glyma08g26680

Unknown

792

Gm19_8642446_G_A

gga- > aga

G- > R

Glyma19g07330

Oxalyl-CoA synthetase

794

Gm19_12051017_G_A

gtc- > atc

V- > I

Glyma19g10100

transferases; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases

2

293

Gm08_20897627_G_A

gga- > aga

G- > R

Glyma08g26580

Enzyme: EC 6.3.2.19 Ubiquitin--protein ligase

294

Gm08_20954490_C_T

gct- > gtt

A- > V

Glyma08g26680

Unknown

699

Gm18_228523_A_G

cca- > ccg

P- > P

Glyma18g00560

Unknown

700

Gm18_263102_C_A

gaa- > gca

E- > A

Glyma18g00620

Sinapate 1-glucosyltransferase.

702

Gm18_

304928

_T_G

ctt- > ctg

L- > L

Glyma18g00690

Pentatricopeptide repeat (PPR) superfamily protein

3

293

Gm08_20897627_G_A

gga- > aga

G- > R

Glyma08g26580

Enzyme: EC 6.3.2.19 Ubiquitin--protein ligase

294

Gm08_20954490_C_T

gct- > gtt

A- > V

Glyma08g26680

Unknown

555

Gm15_1507923_G_A

gga- > gaa

G- > E

Glyma15g02250

Myb-like DNA-binding domain

556

Gm15_1541381_T_C

ttt- > tct

F- > S

Glyma15g02280

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

4

181

Gm07_809165_C_T

acc- > act

T- > T

Glyma07g09670

Zn-dependent exopeptidases superfamily protein

293

Gm08_20897627_G_A

gga- > aga

G- > R

Glyma08g26580

Enzyme: EC 6.3.2.19 Ubiquitin--protein ligase

294

Gm08_20954490_C_T

gct- > gtt

A- > V

Glyma08g26680

Unknown

5

203

Gm07_9506713_T_C

cgg- > tgg

R- > W

Glyma07g11320

5–3 exonuclease

294

Gm08_20954490_C_T

gct- > gtt

A- > V

Glyma08g26680

Unknown

316

Gm08_23691942_G_A

aag- > aaa

K- > K

Glyma08g29220

Unknown