Skip to main content

Table 5 Change in expression of unigenes encoding transcription factors based on Pfam database annotation

From: Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology

Pfam description

Unigene ID

Fold ratio (MWL/CON)

Fold ratio (SWL/CON)

Fold ratio (REH/CON)

Sigma-70 region 2/PDZ domain

comp19121_c0

10.253 (+)

6.0771 (+)

2.4975 (+)

MerR family regulatory protein

comp14862_c0

17.136 (+)

19.208 (+)

2.9717 (+)

Zinc finger, C2H2 type

comp15972_c0

21.736 (+)

20.636 (+)

9.1286 (+)

bZIP

comp15892_c0

358.24 (+)

183.78 (+)

40.496 (+)

 

comp18331_c0

-3.1832 (-)

-2.6807 (-)

-3.1844 (-)

 

comp15544_c1

4.3884 (+)

3.5527 (+)

2.7953 (+)

 

comp13101_c0

26.959

27.171 (+)

2.7079

 

comp7214_c0

5.1910

6.1292 (+)

2.7562

 

comp93507_c0

28.770

61.996 (+)

1.4304

 

comp11150_c0

-20.696 (-)

-5.2427

-3.0823

 

comp18079_c0

-16.651 (-)

-4.8885

-4.9664

 

comp11771_c0

1.4930

1.6420

-2.7064 (-)

 

comp12977_c0

1.2026

1.5545

2.0757 (+)

AP2 domain

comp11814_c0

-2.5254

-3.0625 (-)

1.0713

Homeobox-associated leucine zipper

comp23316_c0

2.0326

2.6365

3.4000 (+)

 

comp15332_c0

4.4661

3.8530 (+)

-1.0889

 

comp17307_c0

3.3889 (+)

1.7018

-1.0460

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

comp17988_c0

1.7127

2.7391 (+)

2.2202

Sigma-70 region 3

comp16574_c0

4.4540

2.8341(+)

2.4441 (+)

Sigma-70 region 2

comp18383_c0

-2.8631(-)

-1.7289

-1.3105

  1. “(+)” indicates significantly upregulated expression; “(-)” indicates significantly downregulated expression