Fig. 12
From: Genetic variation and association mapping for 12 agronomic traits in indica rice
Linkage disequilibrium block of nine loci on chromosome 11 in Hangzhou. a Manhattan plots for flag leaf length. b Quantile-quantile plots for flag leaf length. c Manhattan plots for the ratio of flag leaf length and width. d Quantile-quantile plots for the ratio of flag leaf length and width. e Linkage disequilibrium analysis of the nine loci. The square lattice panel depicts the extent of LD in the region based on r 2. The pink range represents the region of a ~1.6Â Mb hotspot associated with flag leaf length and the ratio of flag leaf length and width. Green dots represent the peaks of new significant SNPs