Removal of redundant contigs from de novo RNA-Seq assemblies via homology search improves accurate detection of differentially expressed genes

Table 1 Summary of reads used for de novo assembly

Library	Source	Total number of reads	Number of bases (giga base)	Average length (bases)
SRR314813	11-day-old seedling, Col-0	28,783,170	2.4	83.4
SRR314814^a	10-day-old root, Col-0	31,362,126	2.6	82.9
SRR314815^a	stage 12 floral bud, Col-0	28,988,204	2.4	82.8
SRR314816	11-day-old seedling, Can-0	27,886,057	2.3	82.5
SRR314817	10-day-old root, Can-0	33,556,983	2.8	83.4
SRR314818	stage 12 floral bud, Can-0	27,798,328	2.3	82.7
Total		178,374,868	14.8	83.0

^a also used for short-read mapping
Col-0 and Can-0 indicates Columbia and Canary Island, the ecotype of A. thaliana respectively

ISSN: 1471-2164