Selection processes in simple sequence repeats suggest a correlation with their genomic location: insights from a fungal model system

Table 3 Hieratical analysis of molecular variance (AMOVA). The genetic diversity between species, among populations and among genotypes within populations of 51 genotypes of H. irregulare and H. annosum was shown. Loci localized more than 500 bp upstream from transcribed regions were referred to as OUT, loci positioned within 500–50 bp before 5’UTR were referred to as UP, loci inside exons were referred to as IN and loci within 50–500 bp after 3’UTR were referred to as DOWN. Degrees of freedom (d.f.) were also included

Source of variation	d.f.	Sum of square	Variance components	percentage variation (%)
OUT
Between species	1	71.086	1.27047	30.61
Among populations within species	3	29.382	0.37090	8.94
Among genotypes within populations	97	243.433	2.50962	60.46
Total	101	343.901	4.15099	100.00
UP
Between species	1	62.024	1.22320	42.53
Among populations within species	3	10.512	0.09931	3.45
Among genotypes within populations	97	150.690	1.55350	54.02
Total	101	223.226	2.87602	100.00
IN
Between species	1	25.901	0.51177	32.45
Among populations within species	3	7.127	0.07491	4.75
Among genotypes within populations	97	92.105	0.99038	62.80
Total	101	125.133	1.57706	100.00
DOWN
Between species	1	22.562	0.41370	24.74
Among populations within species	3	8.064	0.07675	4.59
Among genotypes within populations	97	114.521	1.18062	70.65
Total	101	145.147	1.67107	100.00