Skip to main content

Table 2 Performance of Dintor gene prioritization tool compared to results reported in [40]

From: Dintor: functional annotation of genomic and proteomic data

Tool namea

Response rate

TPR in top 5 %

TPR in top 10 %

TPR in top 30 %

Median

Candid [51]

100 %

21.4 %

33.3 %

64.3 %

18.11

Dintor

100 %

31.0 %

42.9 %

59.5 %

23.62

Endeavour-CS [52]

100 %

26.2 %

42.9 %

90.5 %

11.16

Endeavour-GW [52]

100 %

28.6 %

38.1 %

71.4 %

15.49

GeneDistiller [53]

97.6 %

26.2 %

47.6 %

78.6 %

11.11

GeneWanderer-DK [54]

88.1 %

11.9 %

21.4 %

52.4 %

22.97

GeneWanderer-RW [54]

95.2 %

16.7 %

26.2 %

61.9 %

22.11

Pinta-CS [55]

100 %

28.6 %

31.0 %

71.4 %

18.87

Pinta-GW [55]

100 %

26.2 %

31.0 %

71.4 %

19.03

ToppGene [16]

97.6 %

35.7 %

42.9 %

52.4 %

16.80

  1. Tools that were reported to have a response rate lower than 80 % were not included. The following abbreviations are used: CS candidate set, GW genome-wide, TPR true positive rate
  2. aTool names were taken from [40], references associated with tools are provided in square brackets next to their names. The table is sorted alphabetically by tool name