Skip to main content

Table 2 Significant QTLs* associated with sesame plant height and the seed coat color space

From: Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map

QTL Linkage group Position (cM) Flanking bin_marker Chr_space (kb) LOD Additive effect R2 WC PY YL
qPH-3.1 SLG3 80.91 SLG3_bin98-SLG3_bin99 525.3 7.62 −5.17 0.06
qPH-3.2 SLG3 92.41 SLG3_bin114-SLG3_bin115 735.1 20.75 −8.12 0.15
qPH-3.3 SLG3 98.01 SLG3_bin126-SLG3_bin127 928.1 22.44 −8.91 0.18
qPH-4.1 SLG4 34.11 SLG4_bin49-SLG4_bin50 103.0 10.58 5.86 0.08  
qPH-4.2 SLG4 42.61 SLG4_bin56-SLG4_bin57 908.3 7.16 5.09 0.06
qPH-8.1 SLG8 65.61 SLG8_bin107-SLG8_bin108 33.3 9.41 70.07 0.09  
qPH-8.2 SLG8 70.51 SLG8_bin111-SLG8_bin112 360.2 29.75 10.18 0.23
qPH-9.1 SLG9 78.81 SLG9_bin102-SLG9_bin103 63.4 12.28 6.33 0.09  
qPH-9.2 SLG9 84.71 SLG9_bin105-SLG9_bin106 1255.3 12.22 6.56 0.10
qPH-12.1 SLG12 53.01 SLG12_bin66-SLG12_bin67 94.3 3.52 41.35 0.03
qCZL-3.1 SLG3 99.00 SLG3_bin126-SLG3_bin127 928.1 10.43 −4.88 0.09   
qCZL-4.1 SLG4 34.00 SLG4_bin48-SLG4_bin49 127.4 7.95 4.09 0.07   
qCZL-4.2 SLG4 48.50 SLG4_bin59-SLG4_bin60 237.1 3.94 32.40 0.04  
qCZL-8.1 SLG8 71.50 SLG8_bin111-SLG8_bin112 360.2 27.69 7.82 0.24
qCZL-9.1 SLG9 79.60 SLG9_bin103-SLG9_bin104 725.9 7.47 4.00 0.06  
qCZL-10.1 SLG10 57.60 SLG10_bin104-SLG10_bin105 176.6 2.78 2.39 0.02   
qCZL-12.1 SLG12 52.20 SLG12_bin65-SLG12_bin66 101.8 3.90 2.83 0.03
qCZL-13.1 SLG13 24.40 SLG13_bin32-SLG13_bin33 110.9 6.65 42.23 0.07  
qHFC-3.1 SLG3 92.21 SLG3_bin112-SLG3_bin113 324.9 9.99 −34.32 0.09    
qHFC-3.2 SLG3 97.01 SLG3_bin126-SLG3_bin127 928.1 23.26 −3.65 0.22
qHFC-4.1 SLG4 32.41 SLG4_bin45-SLG4_bin46 359.2 6.13 1.75 0.05
qHFC-8.1 SLG8 65.71 SLG8_bin107-SLG8_bin108 33.3 5.59 30.10 0.05  
qHFC-8.2 SLG8 69.51 SLG8_bin111-SLG8_bin112 360.2 10.91 2.37 0.09
qHFC-9.1 SLG9 78.81 SLG9_bin102-SLG9_bin103 63.4 12.40 2.46 0.10  
qHFC-9.2 SLG9 84.71 SLG9_bin105-SLG9_bin106 1255.3 12.96 2.58 0.11   
qHFC-9.3 SLG9 91.01 SLG9_bin112-SLG9_bin113 78.7 12.40 2.48 0.10  
qIL-3.1 SLG3 41.10 SLG3_bin53-SLG3_bin54 153.7 7.57 0.15 0.07  
qIL-8.1 SLG8 71.50 SLG8_bin111-SLG8_bin112 360.2 10.52 0.17 0.09
qIL-9.1 SLG9 83.70 SLG9_bin105-SLG9_bin106 1255.3 9.76 0.17 0.10
qIL-12.1 SLG12 53.50 SLG12_bin69-SLG12_bin70 63.2 3.86 1.61 0.04  
qNN-3.1 SLG3 91.80 SLG3_bin111-SLG3_bin112 193.0 4.62 −0.91 0.05   
qNN-3.2 SLG3 100.10 SLG3_bin126-SLG3_bin127 928.1 10.15 −1.31 0.10   
qNN-4.1 SLG4 54.00 SLG4_bin72-SLG4_bin73 466.0 3.96 0.94 0.04  
qNN-8.1 SLG8 66.50 SLG8_bin110-SLG8_bin111 1154.1 7.99 1.13 0.07  
qNN-13.1 SLG13 24.40 SLG13_bin32-SLG13_bin33 110.9 8.75 1.42 0.09  
qTL-2.1 SLG2 66.10 SLG2_bin93-SLG2_bin94 686.3 3.04 4.68 0.03    
qTL-3.1 SLG3 94.40 SLG3_bin124-SLG3_bin125 75.7 7.90 −7.68 0.08    
qTL-3.2 SLG3 103.60 SLG3_bin131-SLG3_bin132 83.2 7.38 −6.58 0.08   
qTL-4.1 SLG4 74.10 SLG4_bin93-SLG4_bin94 169.7 3.04 0.36 0.03   
qTL-5.1 SLG5 35.60 SLG5_bin58-SLG5_bin59 71.1 3.19 −4.24 0.03   
qTL-13.1 SLG13 8.80 SLG13_bin22-SLG13_bin23 1362.3 2.67 −0.35 0.03  
qSCa-4.1 SLG4 50.90 SLG4_bin63-SLG4_bin64 199.9 15.41 0.84 0.13  
qSCa-8.1 SLG8 73.40 SLG8_bin114-SLG8_bin115 2518.0 26.73 1.18 0.25  
qSCa-8.2 SLG8 62.60 SLG8_bin105-SLG8_bin106 575.8 9.02 0.69 0.09    
qSCb-4.1 SLG4 50.90 SLG4_bin63-SLG4_bin64 199.9 54.75 4.81 0.39  
qSCb-8.1 SLG8 72.40 SLG8_bin114-SLG8_bin115 2518.0 27.08 3.11 0.21  
qSCb-11.1 SLG11 0.00 SLG11_bin1-SLG11_bin2 367.8 5.56 1.38 0.03  
qSCl-4.1 SLG4 50.90 SLG4_bin63-SLG4_bin64 199.9 30.34 5.62 0.21  
qSCl-8.1 SLG8 73.40 SLG8_bin114-SLG8_bin115 2518.0 44.06 7.14 0.46  
qSCl-11.1 SLG11 0.00 SLG11_bin1-SLG11_bin2 367.8 20.76 4.64 0.14  
  1. * Traits related to plant height including capsule zone length (CZL), height of the first capsule-bearing node (HFC), internode length (IL), node number (NN), and tip length without the capsule (TL) are also listed. “Flanking bin_marker” indicates the bin_markers flanking the related QTL; “Chr_space” indicates the distance between the flanking bin_markers on the sesame chromosome; “Additive effect” indicates the estimated value for the genotype transmitted stably to offspring; “R2” indicates the contribution rate of the locus to the phenotype; Check marks in the last three columns indicate that the QTL was detected at a specific trial site; WC, Wuchang field trial location; PY, Pingyu field trial location; YL, Yangluo field trial location